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Report for CCDS55938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55938.1 Public Homo sapiens 14 ZC3H14 24 110 108 CCDS HistoryNCBI Gene:79882Re-query CCDS DB by CCDS ID:55938.1Re-query CCDS DB by GeneID:79882See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55938.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000555755.5 ENSP00000452475.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555755.5Link to Ensembl Protein Viewer:ENSP00000452475.1Re-query CCDS DB by Nucleotide ID:ENST00000555755Re-query CCDS DB by Protein ID:ENSP00000452475
Original member Current member NCBI NM_001160104.2 NP_001153576.1 Accepted alive Link to Nucleotide Sequence:NM_001160104.2Link to Protein Sequence:NP_001153576.1Re-query CCDS DB by Nucleotide ID:NM_001160104Re-query CCDS DB by Protein ID:NP_001153576Link to BLAST:NP_001153576.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153576.1 730 Q6PJT7-9 730 100% 0 0

Chromosomal Locations for CCDS 55938.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 88563134 88563169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88563651 88563693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88568039 88568153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88571084 88571124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88572030 88572225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88572578 88573007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88574693 88574853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88575840 88575940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88577985 88578140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88596734 88596808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88601924 88602083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88602828 88603045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88607243 88607363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88609267 88609403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88609715 88609803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88610834 88610940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88611745 88611751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2193 nt):
ATGGAGATCGGCACCGAGATCAGCCGCAAGATCCGGAGTGCCATTAAGGGGAAATTACAAGAATTAGGAG
CTTATGTTGATGAAGAACTTCCTGATTACATTATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAAT
GACAGAGGATCTGTCCCTGTTTCTAGGGAACAACACAATTCGATTCACCGTATGGCTTCATGGTGTATTA
GATAAACTTCGCTCTGTTACAACTGAACCCTCTAGTCTGAAGTCTTCTGATACCAACATCTTTGATAGTA
ACGTGCCTTCAAACAAGAGCAATTTCAGTCGGGGAGATGAGAGGAGGCATGAAGCTGCAGTGCCACCACT
TGCCATTCCTAGCGCGAGACCTGAAAAAAGAGATTCCAGAGTTTCTACAAGTTCGCAGGAGTCAAAAACC
ACAAATGTCAGACAGACTTACGATGATGGAGCTGCAACCCGACTAATGTCAACAGTGAAACCTTTGAGGG
AGCCAGCACCCTCTGAAGATGTGATTGATATTAAGCCAGAACCAGATGATCTCATTGACGAAGACCTCAA
CTTTGTGCAGGAGAATCCCTTATCTCAGAAAAAACCTACAGTGACACTTACATATGGTTCTTCTCGCCCT
TCTATTGAAATTTATCGACCACCTGCAAGTAGAAATGCAGATAGTGGTGTTCATTTAAACAGGTTGCAAT
TTCAACAGCAGCAGAATAGTATTCATGCTGCCAAGCAGCTTGATATGCAGAGTAGTTGGGTATATGAAAC
AGGACGTTTGTGTGAACCAGAGGTGCTTAACAGCTTAGAAGAAACGTATAGTCCGTTCTTTAGAAACAAC
TCGGAGAAAATGAGTATGGAGGATGAAAACTTTCGGAAGAGAAAGTTGCCTGTGGTAAGTTCAGTTGTTA
AAGTAAAAAAATTCAATCATGATGGAGAAGAGGAGGAAGAAGATGATGATTACGGGTCTCGAACAGGAAG
CATCTCCAGCAGTGTGTCTGTGCCTGCAAAGCCTGAAAGGAGACCTTCTCTTCCACCTTCTAAACAAGCT
AACAAGAATCTGATTTTGAAGGCTATATCTGAAGCTCAAGAATCCGTAACAAAAACAACTAACTACTCTA
CAGTTCCACAGAAACAGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGAATTGCTAGCAGA
AGTGGTCCAGGGACAAAGTAGGACCCCCAGAATAAGTCCCCCCATTAAAGAAGAGGAAACAAAAGGAGAT
TCTGTAGAAAAAAATCAAGGAACTCAACAGAGGCAATTATTATCCCGACTGCAAATCGACCCAGTAATGG
CAGAAACTCTGCAGATGAGTCAAGATTACTATGACATGGAATCCATGGTCCATGCAGACACAAGATCATT
TATTCTGAAGAAGCCAAAGCTGTCTGAGGAAGTAGTAGTGGCACCAAACCAAGAGTCGGGGATGAAGACT
GCAGATTCCCTTCGGGTACTTTCAGGACACCTTATGCAGACACGAGATCTTGTACAACCAGATAAACCTG
CAAGTCCCAAGTTTATAGTGACGCTGGATGGTGTCCCCAGCCCCCCAGGATACATGTCAGATCAAGAGGA
GGACATGTGCTTTGAAGGAATGAAACCCGTAAACCAAACTGCAGCCTCAAACAAGGGACTCAGAGGTCTC
CTCCACCCACAGCAGTTGCACTTGCTGAGCAGGCAGCTTGAGGACCCAAATGCTGAGATGAGTGAACTGA
GTGTGGCACAGAAACCAGAAAAACTTTTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGA
GTGTGCCTACCATCACCCCATCTCACCCTGCAAAGCCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTG
TTTGTTCACCCAAATTGTAAATATGATGCAAAGTGTACTAAACCAGATTGTCCCTTCACTCATGTGAGTA
GAAGAATTCCAGTACTGTCTCCAAAACCAGTTGCACCACCAGCACCACCTTCCAGTAGTCAGCTCTGCCG
TTACTTCCCTGCTTGTAAGAAGATGGAATGTCCCTTCTATCATCCAAAACATTGTAGGTTTAACACTCAA
TGTACAAGACCGGACTGCACATTCTACCATCCCACCATTAATGTCCCACCACGACATGCCTTGAAATGGA
TTCGACCTCAAACCAGCGAATAG

Translation (730 aa):
MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTIRFTVWLHGVL
DKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDSRVSTSSQESKT
TNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQENPLSQKKPTVTLTYGSSRP
SIEIYRPPASRNADSGVHLNRLQFQQQQNSIHAAKQLDMQSSWVYETGRLCEPEVLNSLEETYSPFFRNN
SEKMSMEDENFRKRKLPVVSSVVKVKKFNHDGEEEEEDDDYGSRTGSISSSVSVPAKPERRPSLPPSKQA
NKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEELLAEVVQGQSRTPRISPPIKEEETKGD
SVEKNQGTQQRQLLSRLQIDPVMAETLQMSQDYYDMESMVHADTRSFILKKPKLSEEVVVAPNQESGMKT
ADSLRVLSGHLMQTRDLVQPDKPASPKFIVTLDGVPSPPGYMSDQEEDMCFEGMKPVNQTAASNKGLRGL
LHPQQLHLLSRQLEDPNAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCL
FVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQ
CTRPDCTFYHPTINVPPRHALKWIRPQTSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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