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Report for CCDS55971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55971.1 Public Homo sapiens 15 LRRC49 24 110 108 CCDS HistoryNCBI Gene:54839Re-query CCDS DB by CCDS ID:55971.1Re-query CCDS DB by GeneID:54839See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000443425.6 ENSP00000414065.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443425.6Link to Ensembl Protein Viewer:ENSP00000414065.2Re-query CCDS DB by Nucleotide ID:ENST00000443425Re-query CCDS DB by Protein ID:ENSP00000414065
Original member Current member NCBI NM_001199018.3 NP_001185947.1 Accepted alive Link to Nucleotide Sequence:NM_001199018.3Link to Protein Sequence:NP_001185947.1Re-query CCDS DB by Nucleotide ID:NM_001199018Re-query CCDS DB by Protein ID:NP_001185947Link to BLAST:NP_001185947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185947.1 642 Q8IUZ0-3 642 100% 0 0

Chromosomal Locations for CCDS 55971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 70898395 70898455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70900922 70901024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70904552 70904755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70911532 70911598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70919050 70919193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70936761 70936822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70963785 70963932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70980101 70980184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70984094 70984257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71008379 71008616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71009807 71009992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71012804 71012913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71037179 71037332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71049409 71049612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGAGGTCCATCACCCAAGGAGCTTGTAGATTTATTTGGGAAGACAAGGGCTACATATCTGGTGATCATA
TTAATTTGGTGAGCTCATCATTGTCATCATTTCCTATTCTTCAACGTTCTTCTGAAGAGAAAATTCTTTA
CTCAGACAGGTTGAGCCTAGAAAGACAAAAGCTGACCGTATGTCCTATCATCAATGGGGAAGACCACCTT
CGTTTGTTGAACTTTCAACACAATTTTATAACTCGGATACAAAATATTTCTAATCTACAGAAGTTAATAT
CGTTGGATTTATATGATAACCAGATTGAAGAAATTAGTGGGCTTTCGACTCTGAGATGTCTTCGTGTCCT
TCTGTTGGGGAAAAACAGAATCAAGAAAATCTCAAATCTGGAGAATCTAAAAAGCTTAGATGTCTTGGAT
CTTCATGGAAATCAGATTACCAAAATTGAAAATATTAATCATTTGTGTGAGTTGAGAGTTTTAAATCTTG
CCAGGAACTTTTTAAGTCATGTTGATAATCTTAATGGGCTGGATTCACTAACTGAACTTAACTTGCGACA
CAATCAAATCACTTTCGTGAGAGATGTGGATAATTTGCCCTGCCTCCAACATCTCTTTCTCAGCTTTAAC
AATATATCTAGTTTTGACAGTGTTTCCTGCCTTGCTGACTCTTCTTCCCTCTCGGACATCACCTTTGATG
GCAATCCCATAGCTCAAGAGTCATGGTACAAACACACTGTCCTTCAGAATATGATGCAGCTGCGCCAGCT
AGATATGAAGAGAATCACGGAAGAAGAAAGGCGTATGGCATCTGTTTTAGCCAAAAAAGAGGAAGAGAAG
AAGCGGGAAAGTCATAAACAATCTTTGCTTAAGGAGAAGAAAAGGTTAACAATTAACAACGTAGCTCGAC
AGTGGGACTTGCAACAACAACGAGTAGCCAATATTGCTACAAATGAAGATAGAAAAGATTCTGACTCTCC
TCAGGACCCCTGTCAGATTGATGGAAGCACCCTCTCTGCATTCCCAGAGGAAACAGGGCCTCTAGACTCA
GGACTCAACAATGCTTTACAAGGTTTATCTGTCATAGACACATACCTTGTTGAAGTGGACGGGGATACAC
TTTCCCTATATGGCTCAGGAGCACTGGAATCTCTGGATAGGAATTGGAGTGTTCAAACAGCAGGAATGAT
CACAACAGTCTCCTTCACTTTCATAGAATTTGATGAAATCGTCCAAGTGCTTCCTAAACTGAAGATTAAG
TTTCCTAATTCTCTGCACCTTAAATTCAAGGAAACAAATCTTGTAATGCTGCAGCAATTTAACGCACTAG
CCCAACTCCGTCGTATTGACCAGTTGACAATTGATCCTCAAGGAAATCCAGTTGTCAATTTTACACTCTG
GAAATACTATGTACTGTTTAGGCTAAGCCATTTCAGTATGCAGAAAATAAATGGAACAGAGGTGACACAG
AATGATATGATAATGGCTGAAAGGCTCTTTGGAATCCTAGCACATGTAGCATCTTCTGAGTTACCCCAGT
ATCGTCTGATTTCCATTCTGGGTGATGCCAGGAAAAAGCAATTTCGGTATCTACTAGAATCCAAAGGAAA
AAAACCTGGTATTATCAACGAAGAAAATAATGACAGCAAAAGACTTGTAGGAGAAAACACAAATCGTGCT
ACATTAAATTATACTACAAGAGACTTTTATAATGAAAAGCTAGAGGAAATAAAGGAAAAGAAGAAATTCT
GTAAAACATATATAGAAGACCTTGTGAAGGAAGCCACAGAAATCAACATGAAAAATGAGGCTTTGCAGAA
GCTTTGGCCACAGATGTTCATTGAGCTTGTTAGGGATGCAGTCATAGAAATTCGCAATAAAAATTCCTAT
ATGAAGCTCTGCCTACAGCAGATAACAGACCAAAAATAA

Translation (642 aa):
MRSITQGACRFIWEDKGYISGDHINLVSSSLSSFPILQRSSEEKILYSDRLSLERQKLTVCPIINGEDHL
RLLNFQHNFITRIQNISNLQKLISLDLYDNQIEEISGLSTLRCLRVLLLGKNRIKKISNLENLKSLDVLD
LHGNQITKIENINHLCELRVLNLARNFLSHVDNLNGLDSLTELNLRHNQITFVRDVDNLPCLQHLFLSFN
NISSFDSVSCLADSSSLSDITFDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERRMASVLAKKEEEK
KRESHKQSLLKEKKRLTINNVARQWDLQQQRVANIATNEDRKDSDSPQDPCQIDGSTLSAFPEETGPLDS
GLNNALQGLSVIDTYLVEVDGDTLSLYGSGALESLDRNWSVQTAGMITTVSFTFIEFDEIVQVLPKLKIK
FPNSLHLKFKETNLVMLQQFNALAQLRRIDQLTIDPQGNPVVNFTLWKYYVLFRLSHFSMQKINGTEVTQ
NDMIMAERLFGILAHVASSELPQYRLISILGDARKKQFRYLLESKGKKPGIINEENNDSKRLVGENTNRA
TLNYTTRDFYNEKLEEIKEKKKFCKTYIEDLVKEATEINMKNEALQKLWPQMFIELVRDAVIEIRNKNSY
MKLCLQQITDQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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