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Report for CCDS56026.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56026.2 Public Homo sapiens 17 SLFN12L 24 110 108 CCDS HistoryNCBI Gene:100506736Re-query CCDS DB by CCDS ID:56026.2Re-query CCDS DB by GeneID:100506736See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 56026.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260908.13 ENSP00000437635.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000260908.13Link to Ensembl Protein Viewer:ENSP00000437635.2Re-query CCDS DB by Nucleotide ID:ENST00000260908Re-query CCDS DB by Protein ID:ENSP00000437635
Original member Current member NCBI NM_001195790.3 NP_001182719.2 Accepted alive Link to Nucleotide Sequence:NM_001195790.3Link to Protein Sequence:NP_001182719.2Re-query CCDS DB by Nucleotide ID:NM_001195790Re-query CCDS DB by Protein ID:NP_001182719Link to BLAST:NP_001182719.2

Chromosomal Locations for CCDS 56026.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35474923 35475485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35478075 35478185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35479117 35480155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGAACATCAGTATTGATTTAGACACAAACTATGCTGAGCTGGTTCTAAATGTGGGAAGAGTCACTCTTG
GAGAGAACAATAGAAAAAAAATGAAGGATTGTCAACTGAGAAAACAGCAGAATGAAAATGTCTCACGAGC
TGTGTGTGCTCTGCTGAATTCTGGAGGGGGAGTGATCAAGGCTGAAGTTGAGAATAAAGGCTATAGTTAT
AAAAAAGATGGAATAGGGCTAGATTTGGAAAATTCTTTTAGTAACATGCTGCCATTTGTTCCTAATTTCC
TGGACTTCATGCAGAATGGTAACTACTTTCACATTTTTGTGAAATCATGGAGCTTGGAAACCTCTGGTCC
GCAGATTGCCACGTTGAGCTCCAGTTTGTACAAGAGAGATGTAACGTCTGCAAAAGTCATGAATGCTTCT
GCTGCACTGGAGTTCCTCAAAGACATGGAAAAAACTGGAGGGAGAGCATATTTAAGACCAGAATTCCCTG
CAAAAAGGGCCTGTGTTGATGTACAAGAAGAAAGTAACATGGAAGCCTTGGCTGCTGATTTTTTTAACAG
AACAGAACTTGGTTATAAAGAAAAATTGACCTTTACTGAATCCACACACGTTGAAATAAAAAACTTCTCG
ACTGAAAAGTTGTTACAACGAATTACAGAGATTCTCCCTCAATATGTTTCTGCATTTGCAAATACTGATG
GAGGATATTTATTCGTTGGTCTAAATGAAGATAAAGAAGTAATTGGCTTTAAAGCAGAGAAGAGTTATCT
TACTAAGTTAGAAGAAGTAACAAAAAATTCCATTGGGAAACTGCCTGTGCATCACTTCTGTGTGGAGAAG
GGGACGATAAATTACTTATGCAAATTCCTTGGAGTATATGATAAAGGAAGGCTTTGTGGATATGTGTATG
CACTCAGAGTGGAACGCTTCTGCTGTGCAGTGTTTGCTAAAAAGCCTGATTCCTGGCACGTGAAAGATAA
CAGAGTTAAGCAGTTGACCGAGAAGGAATGGATCCAGTTCATGGTGGATTCAGAACCAGTATGTGAGGAA
CTGCCCTCTCCAGCAAGTACATCATCACCTGTCTCCCAGAGTTATCCTCTTCGTGAATATATTAACTTCA
AAATTCAGCCACTGAGATATCACCTTCCAGGGCTATCAGAAAAGATAACTTGTGCTCCAAAAACCTTCTG
CAGAAATCTGTTCTCACAACATGAAGGACTTAAGCAATTAATATGTGAAGAAATGGGCTCTGTCAATAAG
GGCTCACTGATCTTCTCTAGGAGCTGGTCTTTGGATCTGGGCTTGCAAGAGAACCACAAAGTCCTCTGTG
ATGCTCTTCTGATTTCCCAGGACAAGCCTCCAGTCCTATACACCTTCCACATGGTACAGGATGAGGAGTT
TAAAGACTATTCTACACAAACTGCCCAAACTTTAAAACAGAAGCTGGCAAAAATTGGTGGTTACACTAAA
AAAGTGTGTGTCATGACAAAGATCTTCTACTTGAGCCCTGAAGGCAAGACAAGCTGCCAGTATGATTTAA
ACTCGCAAGTAATTTACCCTGAATCCTACTATTGGACAACAGCTCAAACAATGAAAGACTTGGAAAAGGC
CCTTTCAAATATCTTACCTAAGGAGAATCAAATCTTTTTGTTTGTTTGTTTGTTTCGTTTTTGTTTGTTT
GTTTGTTGGTTTGTTTGTTTTTTCTTGAGATGA

Translation (570 aa):
MNISIDLDTNYAELVLNVGRVTLGENNRKKMKDCQLRKQQNENVSRAVCALLNSGGGVIKAEVENKGYSY
KKDGIGLDLENSFSNMLPFVPNFLDFMQNGNYFHIFVKSWSLETSGPQIATLSSSLYKRDVTSAKVMNAS
AALEFLKDMEKTGGRAYLRPEFPAKRACVDVQEESNMEALAADFFNRTELGYKEKLTFTESTHVEIKNFS
TEKLLQRITEILPQYVSAFANTDGGYLFVGLNEDKEVIGFKAEKSYLTKLEEVTKNSIGKLPVHHFCVEK
GTINYLCKFLGVYDKGRLCGYVYALRVERFCCAVFAKKPDSWHVKDNRVKQLTEKEWIQFMVDSEPVCEE
LPSPASTSSPVSQSYPLREYINFKIQPLRYHLPGLSEKITCAPKTFCRNLFSQHEGLKQLICEEMGSVNK
GSLIFSRSWSLDLGLQENHKVLCDALLISQDKPPVLYTFHMVQDEEFKDYSTQTAQTLKQKLAKIGGYTK
KVCVMTKIFYLSPEGKTSCQYDLNSQVIYPESYYWTTAQTMKDLEKALSNILPKENQIFLFVCLFRFCLF
VCWFVCFFLR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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