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Report for CCDS56064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56064.1 Public Homo sapiens 18 C18orf21 24 110 108 CCDS HistoryNCBI Gene:83608Re-query CCDS DB by CCDS ID:56064.1Re-query CCDS DB by GeneID:83608See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56064.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333234.5 ENSP00000329492.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000333234.5Link to Ensembl Protein Viewer:ENSP00000329492.5Re-query CCDS DB by Nucleotide ID:ENST00000333234Re-query CCDS DB by Protein ID:ENSP00000329492
Original member Current member EBI ENST00000610527.4 ENSP00000480486.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610527.4Link to Ensembl Protein Viewer:ENSP00000480486.1Re-query CCDS DB by Nucleotide ID:ENST00000610527Re-query CCDS DB by Protein ID:ENSP00000480486
Original member Current member NCBI NM_001201474.2 NP_001188403.1 Accepted alive Link to Nucleotide Sequence:NM_001201474.2Link to Protein Sequence:NP_001188403.1Re-query CCDS DB by Nucleotide ID:NM_001201474Re-query CCDS DB by Protein ID:NP_001188403Link to BLAST:NP_001188403.1
Original member Current member NCBI NM_001201475.2 NP_001188404.1 Accepted alive Link to Nucleotide Sequence:NM_001201475.2Link to Protein Sequence:NP_001188404.1Re-query CCDS DB by Nucleotide ID:NM_001201475Re-query CCDS DB by Protein ID:NP_001188404Link to BLAST:NP_001188404.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188403.1 132 Q32NC0-2 132 100% 0 0
NP_001188404.1 132 Q32NC0-2 132 100% 0 0

Chromosomal Locations for CCDS 56064.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35975060 35975095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35977410 35977600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35978835 35979006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGGTGAAAAAGTTCAAAGACTCCAAAAGTGTATTGTTGATCACTTGTAAAACATGCAACAGAACAGTGA
AACATCATGGTAAAAGTAGAAGCTTTGTGTCAACATTGAAGAGCAATCCTGCCACTCCTACAAGTAAACT
CAGCCTGAAGACACCAGAGAGAAGGACTGCAAACCCAAATCATGACATGTCTGGCTCGAAAGGCAAGAGC
CCAGCATCGGTTTTCAGAACACCTACATCTGGACAGTCAGTATCTACTTGCTCCTCAAAGAACACCAGCA
AAACAAAGAAACACTTCTCTCAACTAAAAATGTTACTTAGTCAGAATGAATCCCAAAAGATTCCAAAGGT
GGACTTCAGAAATTTCTTATCTTCTCTGAAGGGTGGACTTTTAAAATAA

Translation (132 aa):
MVKKFKDSKSVLLITCKTCNRTVKHHGKSRSFVSTLKSNPATPTSKLSLKTPERRTANPNHDMSGSKGKS
PASVFRTPTSGQSVSTCSSKNTSKTKKHFSQLKMLLSQNESQKIPKVDFRNFLSSLKGGLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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