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Report for CCDS56227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56227.1 Public Homo sapiens 22 TBC1D10A 24 110 108 CCDS HistoryNCBI Gene:83874Re-query CCDS DB by CCDS ID:56227.1Re-query CCDS DB by GeneID:83874See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403477.7 ENSP00000384996.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403477.7Link to Ensembl Protein Viewer:ENSP00000384996.3Re-query CCDS DB by Nucleotide ID:ENST00000403477Re-query CCDS DB by Protein ID:ENSP00000384996
Original member Current member NCBI NM_001204240.2 NP_001191169.1 Accepted alive Link to Nucleotide Sequence:NM_001204240.2Link to Protein Sequence:NP_001191169.1Re-query CCDS DB by Nucleotide ID:NM_001204240Re-query CCDS DB by Protein ID:NP_001191169Link to BLAST:NP_001191169.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191169.1 515 Q9BXI6-2 515 100% 0 0

Chromosomal Locations for CCDS 56227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30292375 30292851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30293651 30293805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30293921 30294110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30294796 30294861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30294941 30295055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30295737 30295843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30299444 30299551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30304531 30304651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30326673 30326881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGCGAAGAGCAACGGAGAGAATGGGCCGCGCGCGCCCGCGGCCGGGGAAAGCCTGTCGGGAACCCGGG
AGAGCCTGGCCCAGGGCCCCGACGCCGCAACCACCGACGAACTCAGCTCTCTCGGGTCTGACTCGGAGGC
CAACGGCTTCGCCGAGCGCCGCATCGACAAGTTCGGCTTCATCGTGGGCTCGCAGGGCGCCGAGGGCGCG
CCCTGCCCTCTGCTCCACAGGCTGGAGGAAGTACCCCTGGAGGTGCTGAGGCAGAGGGAGTCCAAGTGGC
TGGACATGCTCAACAACTGGGACAAATGGATGGCCAAGAAGCACAAAAAGATTCGTCTGCGGTGCCAAAA
GGGCATCCCGCCTTCTCTGCGGGGCCGTGCTTGGCAGTACCTGTCAGGAGGCAAGGTGAAGTTACAGCAG
AACCCTGGAAAGTTTGACGAGCTGGACATGTCCCCTGGGGACCCCAAGTGGCTGGACGTGATTGAGCGTG
ACCTGCACCGGCAGTTCCCATTCCATGAGATGTTTGTGTCCCGGGGGGGCCACGGCCAGCAGGACCTATT
CCGTGTGCTGAAGGCCTACACGCTGTACCGGCCCGAGGAGGGCTACTGCCAGGCCCAGGCGCCCATTGCC
GCTGTCTTGCTCATGCATATGCCTGCTGAGCAAGCCTTCTGGTGCCTGGTACAGATCTGTGAGAAGTACC
TGCCCGGCTACTACAGCGAGAAACTGGAGGCGATCCAGCTGGACGGGGAGATCCTTTTCTCGCTGTTGCA
GAAGGTGTCGCCGGTGGCCCACAAGCACCTCAGCCGTCAGAAGATCGACCCGCTCCTCTATATGACAGAA
TGGTTCATGTGCGCCTTCTCCCGAACCTTGCCCTGGAGCTCTGTGCTGCGTGTCTGGGACATGTTCTTCT
GTGAAGGGGTCAAGATCATCTTCCGGGTGGGGCTGGTGCTGCTGAAGCACGCGCTGGGCTCCCCTGAGAA
GGTCAAAGCCTGCCAGGGCCAGTACGAGACCATCGAGCGACTGCGGAGCCTCAGCCCCAAGATCATGCAG
GAGGCCTTTCTGGTCCAGGAGGTGGTGGAGTTGCCCGTGACAGAGCGCCAGATTGAGCGCGAACACCTCA
TTCAGCTGCGGCGCTGGCAGGAGACCCGGGGTGAGCTGCAGTGCCGCTCCCCGCCCAGGCTGCATGGTGC
CAAGGCTATCTTGGATGCAGAACCTGGTCCCCGGCCTGCCCTACAACCTTCACCATCCATCCGCCTGCCC
CTAGATGCCCCCCTCCCTGGCTCCAAAGCCAAGCCCAAGCCACCCAAGCAGGCCCAGAAGGAGCAGCGGA
AACAGATGAAGGGGAGAGGGCAGCTGGAGAAGCCCCCAGCCCCAAATCAAGCCATGGTGGTGGCCGCTGC
AGGAGATGCATGTCCCCCACAGCATGTGCCCCCGAAGGACTCAGCCCCCAAGGACTCAGCCCCTCAGGAT
TTGGCTCCCCAGGTCTCAGCCCACCACCGCTCCCAGGAGAGCTTGACGTCCCAAGAGAGTGAGGACACCT
ACTTGTAA

Translation (515 aa):
MAKSNGENGPRAPAAGESLSGTRESLAQGPDAATTDELSSLGSDSEANGFAERRIDKFGFIVGSQGAEGA
PCPLLHRLEEVPLEVLRQRESKWLDMLNNWDKWMAKKHKKIRLRCQKGIPPSLRGRAWQYLSGGKVKLQQ
NPGKFDELDMSPGDPKWLDVIERDLHRQFPFHEMFVSRGGHGQQDLFRVLKAYTLYRPEEGYCQAQAPIA
AVLLMHMPAEQAFWCLVQICEKYLPGYYSEKLEAIQLDGEILFSLLQKVSPVAHKHLSRQKIDPLLYMTE
WFMCAFSRTLPWSSVLRVWDMFFCEGVKIIFRVGLVLLKHALGSPEKVKACQGQYETIERLRSLSPKIMQ
EAFLVQEVVELPVTERQIEREHLIQLRRWQETRGELQCRSPPRLHGAKAILDAEPGPRPALQPSPSIRLP
LDAPLPGSKAKPKPPKQAQKEQRKQMKGRGQLEKPPAPNQAMVVAAAGDACPPQHVPPKDSAPKDSAPQD
LAPQVSAHHRSQESLTSQESEDTYL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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