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Report for CCDS5646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5646.1 Public Homo sapiens 7 SEM1 24 110 108 CCDS HistoryNCBI Gene:7979Re-query CCDS DB by CCDS ID:5646.1Re-query CCDS DB by GeneID:7979See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5646.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000248566.4 ENSP00000248566.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000248566.4Link to Ensembl Protein Viewer:ENSP00000248566.2Re-query CCDS DB by Nucleotide ID:ENST00000248566Re-query CCDS DB by Protein ID:ENSP00000248566
Original member Current member NCBI NM_006304.2 NP_006295.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006304.2Link to Protein Sequence:NP_006295.1Re-query CCDS DB by Nucleotide ID:NM_006304Re-query CCDS DB by Protein ID:NP_006295Link to BLAST:NP_006295.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006295.1 70 P60896-1 70 100% 0 0

Chromosomal Locations for CCDS 5646.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 96688924 96688966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 96694798 96694891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 96709688 96709763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (213 nt):
ATGTCAGAGAAAAAGCAGCCGGTAGACTTAGGTCTGTTAGAGGAAGACGACGAGTTTGAAGAGTTCCCTG
CCGAAGACTGGGCTGGCTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATTGGGATGATGACAA
TGTAGAGGATGACTTCTCTAATCAGTTACGAGCTGAACTAGAGAAACATGGTTATAAGATGGAGACTTCA
TAG

Translation (70 aa):
MSEKKQPVDLGLLEEDDEFEEFPAEDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHGYKMETS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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