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Report for CCDS56573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56573.1 Public Homo sapiens 9 CCDC107 24 110 108 CCDS HistoryNCBI Gene:203260Re-query CCDS DB by CCDS ID:56573.1Re-query CCDS DB by GeneID:203260See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56573.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378409.7 ENSP00000367665.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378409.7Link to Ensembl Protein Viewer:ENSP00000367665.3Re-query CCDS DB by Nucleotide ID:ENST00000378409Re-query CCDS DB by Protein ID:ENSP00000367665
Original member Current member NCBI NM_001195200.2 NP_001182129.1 Accepted alive Link to Nucleotide Sequence:NM_001195200.2Link to Protein Sequence:NP_001182129.1Re-query CCDS DB by Nucleotide ID:NM_001195200Re-query CCDS DB by Protein ID:NP_001182129Link to BLAST:NP_001182129.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182129.1 256 Q8WV48-5 256 100% 0 0

Chromosomal Locations for CCDS 56573.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35658380 35658485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35658576 35658727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35660401 35660461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35660557 35660647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35660746 35660858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35660940 35661187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGGCGGGCGCAGTTTCGCTCTTGGGTGTGGTGGGGCTGCTGCTTGTGTCTGCGCTGTCCGGGGTCCTAG
GAGACCGCGCCAATCCCGACCTCCGGGCACACCCAGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGA
ACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGACCCGGGCCGGGTCGCTGCCTCTGGGGGCG
CTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAACTGCGGTTC
TCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGAGCAACAGCTGGCCCAGTTGACACAACAGCT
GGCCCAGACAGAGCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGTGTGACTACT
CTGGCTGGAGCCCAGCAGGAGCTTCTGAACATGAAGCTATGGACCATCCACGAGCTGCTGCAAGATAGCA
AGCCGGACAAGGATATGGAGGCTTCAGAACCAGAGGCCAGCAGACCTCTTCCTGAGGACTTCTGTTTAAA
GGAGGACGAGGAGGAGATTGGTGACAGTCAGGCCTGGGAGGAGCCCACAAACTGGAGCACAGAGACATGG
AACCTAGCTACTTCCTGGGAGGTGGGGCGGGGACTACGGAGAAGGTGCAGCCAGGCTGTGGCAAAGGGCC
CCAGTCACAGCCTTGGCTGGGAAGGAGGGACGACAGCTGAAGGTCGACTAAAACAAAGTCTGTTTTCATG
A

Translation (256 aa):
MAGAVSLLGVVGLLLVSALSGVLGDRANPDLRAHPGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGA
LYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSEQQLAQLTQQLAQTEQHLNNLMAQLDPLFERVTT
LAGAQQELLNMKLWTIHELLQDSKPDKDMEASEPEASRPLPEDFCLKEDEEEIGDSQAWEEPTNWSTETW
NLATSWEVGRGLRRRCSQAVAKGPSHSLGWEGGTTAEGRLKQSLFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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