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Report for CCDS56674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56674.1 Public Mus musculus 10 Zbtb2 23 108 98 CCDS HistoryNCBI Gene:381990Re-query CCDS DB by CCDS ID:56674.1Re-query CCDS DB by GeneID:381990See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100077.4 ENSMUSP00000097655.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100077.4Link to Ensembl Protein Viewer:ENSMUSP00000097655.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100077Re-query CCDS DB by Protein ID:ENSMUSP00000097655
Original member Current member EBI ENSMUST00000100078.9 ENSMUSP00000097656.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100078.9Link to Ensembl Protein Viewer:ENSMUSP00000097656.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100078Re-query CCDS DB by Protein ID:ENSMUSP00000097656
Original member Current member NCBI NM_001033466.3 NP_001028638.2 Accepted alive Link to Nucleotide Sequence:NM_001033466.3Link to Protein Sequence:NP_001028638.2Re-query CCDS DB by Nucleotide ID:NM_001033466Re-query CCDS DB by Protein ID:NP_001028638Link to BLAST:NP_001028638.2
Original member Current member NCBI NM_001359811.1 NP_001346740.1 Accepted alive Link to Nucleotide Sequence:NM_001359811.1Link to Protein Sequence:NP_001346740.1Re-query CCDS DB by Nucleotide ID:NM_001359811Re-query CCDS DB by Protein ID:NP_001346740Link to BLAST:NP_001346740.1

Chromosomal Locations for CCDS 56674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 4368480 4369851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4374570 4374742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGATTTGACCAACCATGGACTTATTCTACTGCAGCAGTTAAACGCTCAGCGAGAGTTTGGTTTCCTGT
GTGACTGCACGGTTGCAATCGGCGATGTGTACTTCAAGGCACACAAATCAGTTCTCGCTTCATTCTCCAA
TTACTTTAAGATGTTGTTTGTCCATCAGACCAGTGAATGCGTCCGCCTGAAGCCCACTGACATACAGCCT
GACATATTCAGCTATCTGCTCCACCTGATGTACACAGGGAAGATGGCCCCACAGCTCATCGACCCTGTGA
GGCTAGAGCAAGGGATCAAATTCCTGCACGCATACCCCCTCATCCAGGAAGCCAGCCTTGCCAGCCAAGG
CAGCTTTTCCCATCCCGAGCAAGTCTTCCCTCTGGCCTCATCCTTGTACGGCATTCAGATTGCAGACCAT
CAGCTGAGACAAGCCACCAAGATGAATTTAGGGCCTGAGAAACTTGGACGGGAGCCTAGGCCACAGGCAT
CCAGGATGAACCAGGAGCCTGTACCAGAGACCTCGCAGCTGTCCCAGCTGACTTCAAACCTAGCCCAGGT
GAATCGGACAAATATAACTCCCGAAGACCCCCTGCAGACCTCGCTGTCACCTGAACTTGTCTCCACACCT
GTGCCTCCCCCTCCTCCTGGGGAGGAGACCAACCTAGAGGCCTCTTCCTCTGACGAGCAGCCATCATCCC
TTACGATCGCCCACGTGAAGCCAAGCATCATGAAGAGGAATGGAAGCTTCCCCAAGTACTATGCCTGCCA
CCTGTGCGGCCGTCGCTTCACGCTGCGCAGCAGCCTGCGGGAGCACCTGCAGATCCACACCGGGGTACCC
TTCACTGCGGGCCCGCCAGGGGAAGGCCGTGGGCCCCTGTCTCTCTGCAGCAATGCGGCCGACCTGGGCA
AGGATGCTCTGGAAGTACCGGAGGCGGGGATGATCAGCGACAGCGAGCTGCAGCACATCTCCGACTCCCC
CATCATCGATGGGCAGCAACAGTCGGAGACCCCACCGCCCTCAGACATTGCAGACATCGACAACTTGGAG
CAGGCAGACCAAGAGAGGGAAGTGAAGAGGCGCAAGTATGAGTGCACGATCTGCGGCCGCAAGTTCATCC
AGAAAAGCCACTGGCGTGAGCACATGTACATTCACACGGGCAAACCCTTCAAGTGCAGCACCTGTGACAA
GAGCTTCTGTAGGGCCAACCAGGCCGCACGCCACGTGTGCCTCAACCAGAGCATTGACACCTACACCATG
GTGGACAAGCAGACACTGGAGCTCTGCACGTTCGAGGAAGGCAGCCAGATGGACAATATGCTGGTGCAGG
CCAACAAGCCCTACAAGTGCAACCTGTGTGACAAGACGTTCTCCACACCCAATGAGGTGGTCAAACACTC
CTGCCAGAACCAGAACTCAGACGTGTTCGCCCTGGACGAGGGGCGGTCAGTCCTGCTTGGCAGTGGGGAC
TCAGAAGTAACTGAACCTGACCACCCTGTGTTAGCGTCCATCAAAAAGGAACAGGAAACTGTGTTACTAG
ACTGA

Translation (514 aa):
MDLTNHGLILLQQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSECVRLKPTDIQP
DIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGSFSHPEQVFPLASSLYGIQIADH
QLRQATKMNLGPEKLGREPRPQASRMNQEPVPETSQLSQLTSNLAQVNRTNITPEDPLQTSLSPELVSTP
VPPPPPGEETNLEASSSDEQPSSLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVP
FTAGPPGEGRGPLSLCSNAADLGKDALEVPEAGMISDSELQHISDSPIIDGQQQSETPPPSDIADIDNLE
QADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTM
VDKQTLELCTFEEGSQMDNMLVQANKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALDEGRSVLLGSGD
SEVTEPDHPVLASIKKEQETVLLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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