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Report for CCDS5688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5688.1 Public Homo sapiens 7 GAL3ST4 24 110 108 CCDS HistoryNCBI Gene:79690Re-query CCDS DB by CCDS ID:5688.1Re-query CCDS DB by GeneID:79690See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5688.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360039.9 ENSP00000353142.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360039.9Link to Ensembl Protein Viewer:ENSP00000353142.4Re-query CCDS DB by Nucleotide ID:ENST00000360039Re-query CCDS DB by Protein ID:ENSP00000353142
Original member Current member EBI ENST00000413800.5 ENSP00000400451.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413800.5Link to Ensembl Protein Viewer:ENSP00000400451.1Re-query CCDS DB by Nucleotide ID:ENST00000413800Re-query CCDS DB by Protein ID:ENSP00000400451
Original member Current member NCBI NM_024637.5 NP_078913.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024637.5Link to Protein Sequence:NP_078913.3Re-query CCDS DB by Nucleotide ID:NM_024637Re-query CCDS DB by Protein ID:NP_078913Link to BLAST:NP_078913.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078913.3 486 Q96RP7-1 486 100% 0 0

Chromosomal Locations for CCDS 5688.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100159928 100160959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100166502 100166805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100166971 100167095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGGGCCCTCTCTCTCCTGCCAGGACGCTGCGGCTCTGGGGACCTCGGAGCCTGGGGGTGGCTCTGGGAG
TCTTCATGACCATTGGCTTTGCACTCCAGCTCTTGGGAGGGCCCTTCCAGAGGAGGCTACCTGGGCTACA
GCTCCGACAGCCCTCGGCCCCATCCCTACGACCAGCCCTTCCGTCCTGCCCACCCCGGCAGCGACTGGTG
TTCCTGAAGACACATAAATCCGGGAGCAGCTCTGTGCTGAGCCTGCTTCACCGCTATGGGGACCAGCACG
GGCTGCGCTTCGCCCTCCCTGCCCGCTACCAGTTTGGCTACCCAAAGCTCTTCCAGGCCTCTAGGGTAAA
AGGCTACCGCCCACAGGGTGGAGGCACCCAGCTCCCCTTCCACATCCTCTGTCACCACATGAGGTTCAAC
CTGAAAGAGGTACTTCAGGTCATGCCTTCTGACAGCTTCTTTTTTTCCATTGTCCGAGACCCAGCGGCTC
TGGCTCGCTCTGCCTTCTCCTACTATAAATCCACCTCATCAGCCTTCCGCAAGTCACCATCTTTGGCTGC
CTTCCTGGCCAATCCTCGAGGCTTCTACAGGCCTGGGGCCCGTGGGGACCACTACGCTCGCAACTTACTA
TGGTTTGACTTTGGCCTGCCCTTTCCCCCAGAGAAGAGGGCCAAGAGAGGGAATATTCATCCCCCCAGAG
ACCCCAACCCCCCACAGCTGCAGGTCTTGCCTTCTGGTGCTGGCCCTCGAGCCCAAACCCTCAATCCCAA
TGCCCTCATCCATCCTGTTTCCACTGTTACTGATCATCGCAGCCAGATATCAAGCCCTGCCTCTTTCGAT
TTGGGGTCTTCATCCTTCATCCAGTGGGGTCTGGCATGGCTGGACTCTGTCTTTGACCTGGTCATGGTGG
CTGAGTACTTCGATGAGTCATTGGTTCTGCTGGCAGATGCCCTGTGCTGGGGTCTAGATGACGTGGTGGG
CTTCATGCACAATGCCCAGGCTGGACATAAGCAGGGCCTCAGCACTGTCAGCAACAGTGGACTGACTGCG
GAGGACCGGCAGCTGACTGCACGGGCCCGAGCCTGGAACAACCTGGACTGGGCTCTCTATGTCCACTTCA
ACCGCAGTCTCTGGGCACGGATAGAGAAATACGGCCAGGGCCGGCTGCAGACAGCTGTGGCCGAGCTCCG
GGCTCGCCGAGAGGCCCTAGCGAAACATTGTCTGGTAGGGGGTGAGGCTTCTGACCCCAAATACATCACT
GATCGCCGGTTCCGCCCCTTCCAGTTTGGGTCAGCTAAGGTTTTGGGCTATATACTTCGGAGTGGATTGA
GCCCCCAAGACCAAGAGGAATGTGAGCGCCTAGCTACCCCTGAGCTCCAGTACAAGGACAAGCTGGATGC
CAAGCAGTTCCCCCCTACCGTCTCACTGCCCCTCAAGACTTCAAGGCCACTCTCCCCATAA

Translation (486 aa):
MGPLSPARTLRLWGPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQLRQPSAPSLRPALPSCPPRQRLV
FLKTHKSGSSSVLSLLHRYGDQHGLRFALPARYQFGYPKLFQASRVKGYRPQGGGTQLPFHILCHHMRFN
LKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSTSSAFRKSPSLAAFLANPRGFYRPGARGDHYARNLL
WFDFGLPFPPEKRAKRGNIHPPRDPNPPQLQVLPSGAGPRAQTLNPNALIHPVSTVTDHRSQISSPASFD
LGSSSFIQWGLAWLDSVFDLVMVAEYFDESLVLLADALCWGLDDVVGFMHNAQAGHKQGLSTVSNSGLTA
EDRQLTARARAWNNLDWALYVHFNRSLWARIEKYGQGRLQTAVAELRARREALAKHCLVGGEASDPKYIT
DRRFRPFQFGSAKVLGYILRSGLSPQDQEECERLATPELQYKDKLDAKQFPPTVSLPLKTSRPLSP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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