NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS56978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56978.1 Public Mus musculus 15 9430069I07Rik 23 108 98 CCDS HistoryNCBI Gene:77358Re-query CCDS DB by CCDS ID:56978.1Re-query CCDS DB by GeneID:77358See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179647.1 ENSMUSP00000136383.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179647.1Link to Ensembl Protein Viewer:ENSMUSP00000136383.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179647Re-query CCDS DB by Protein ID:ENSMUSP00000136383
Original member Current member EBI ENSMUST00000227772.1 ENSMUSP00000154567.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227772.1Link to Ensembl Protein Viewer:ENSMUSP00000154567.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227772Re-query CCDS DB by Protein ID:ENSMUSP00000154567
Original member Current member NCBI NM_001256161.1 NP_001243090.1 Accepted alive Link to Nucleotide Sequence:NM_001256161.1Link to Protein Sequence:NP_001243090.1Re-query CCDS DB by Nucleotide ID:NM_001256161Re-query CCDS DB by Protein ID:NP_001243090Link to BLAST:NP_001243090.1

Chromosomal Locations for CCDS 56978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 34349176 34349348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34355542 34355632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34356350 34356421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGTCTATCACTAAAGCAGCCGGATCCCTGCGTATCTCTAGGATGGGGCGTGCACAATGCTTGACTACTG
AGATGTACGAGCCAGGTGTGTTGAGGCAGAAGTGGGCACAGTTGTGTTCCAAGACGCTGCACATGTGGAC
TGCTGCAAAGGAAGACAAAGAAGGCTTTCTTGGAGCCCCCAGGCAGACCCAGGTGCTCTTTGGGATGAGG
TCCTCGTCTGGAAAGCTATCCTGGGCTATGAAGGACACACCATGTCCACACCCATTCTTCTATAAGGAGA
ACATCTTTCCAACAGTCCTGAGGCTCATGCGTGGAGAGGAAGTACTTAGGCTCTGA

Translation (111 aa):
MSITKAAGSLRISRMGRAQCLTTEMYEPGVLRQKWAQLCSKTLHMWTAAKEDKEGFLGAPRQTQVLFGMR
SSSGKLSWAMKDTPCPHPFFYKENIFPTVLRLMRGEEVLRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH