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Report for CCDS56980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56980.1 Public Mus musculus 15 Polr2k 23 108 98 CCDS HistoryNCBI Gene:17749Re-query CCDS DB by CCDS ID:56980.1Re-query CCDS DB by GeneID:17749See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000180159.7 ENSMUSP00000136975.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180159.7Link to Ensembl Protein Viewer:ENSMUSP00000136975.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180159Re-query CCDS DB by Protein ID:ENSMUSP00000136975
Original member Current member NCBI NM_023127.3 NP_075616.2 Accepted alive Link to Nucleotide Sequence:NM_023127.3Link to Protein Sequence:NP_075616.2Re-query CCDS DB by Nucleotide ID:NM_023127Re-query CCDS DB by Protein ID:NP_075616Link to BLAST:NP_075616.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075616.2 58 Q63871 58 100% 0 0

Chromosomal Locations for CCDS 56980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 36174996 36175056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36175384 36175476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36176754 36176776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (177 nt):
ATGGACGCTCAGAAAGATGTTCAACCACCAAAGCAGCAGCCAATGATATATATTTGTGGAGAGTGTCACA
CCGAAAATGAGATAAAGTCCAGGGATCCCATCAGATGCAGAGAATGTGGATACAGAATAATGTACAAGAA
AAGGACTAAAAGATTGGTGGTTTTTGATGCTCGATGA

Translation (58 aa):
MDAQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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