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Report for CCDS57076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57076.1 Public Mus musculus 17 H2-Q7 23 108 98 CCDS HistoryNCBI Gene:15018Re-query CCDS DB by CCDS ID:57076.1Re-query CCDS DB by GeneID:15018See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57076.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116598.9 ENSMUSP00000112297.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116598.9Link to Ensembl Protein Viewer:ENSMUSP00000112297.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000116598Re-query CCDS DB by Protein ID:ENSMUSP00000112297
Original member Current member NCBI NM_001198561.1 NP_001185490.1 Accepted alive Link to Nucleotide Sequence:NM_001198561.1Link to Protein Sequence:NP_001185490.1Re-query CCDS DB by Nucleotide ID:NM_001198561Re-query CCDS DB by Protein ID:NP_001185490Link to BLAST:NP_001185490.1

Chromosomal Locations for CCDS 57076.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35439221 35439284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35439452 35439721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35439909 35440184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35442967 35442999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35443349 35443353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGCTCTAACAATGCTGCTCTTGCTGGTGGCGGCCGCCCTGACCCTGATCGAGACCCGCGCGGGCCAAC
ACTCGCTGCAATATTTCCACACCGCTGTGTCCCGGCCCGGCCTCGGGGAGCCCTGGTTCATCTCTGTCGG
CTACGTGGACGACACGCAGTTCGTGCGCTTCGACAGCGATGCGGAAAATCCGAGGATGGAGCCGCGGGCG
CGGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGCGGGAGACACAGATCGCCAAGGGCCATGAGCAGA
GTTTCCGAGGGAGCCTGAGGACCGCACAGAGCTACTACAACCAGAGCAAGGGCGGCTCTCACACACTCCA
GTGGATGTATGGCTGTGACATGGGGTCCGACGGGCGCCTCCTCCGCGGGTACCTGCAGTTCGCCTATGAA
GGCCGCGATTACATCGCCCTGAACGAAGACCTGAAAACGTGGACGGCGGTGGACATGGCGGCACAGATCA
CCCGACGCAAGTGGGAGCAGGCTGGTATTGCAGAGAAAGACCAGGCCTACCTGGAGGGCACGTGCATGCA
GTCGCTCCGCAGATACCTGCAGCTCGGGAAGGAGACGCTGCTGCGCACAGGTGGACAAGGAGGGGACTGT
GCTCCAGCTCCAGCATGA

Translation (215 aa):
MALTMLLLLVAAALTLIETRAGQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRA
RWMEQEGPEYWERETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYE
GRDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRTGGQGGDC
APAPA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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