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Report for CCDS57114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57114.1 Public Mus musculus 18 Osbpl1a 23 108 98 CCDS HistoryNCBI Gene:64291Re-query CCDS DB by CCDS ID:57114.1Re-query CCDS DB by GeneID:64291See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57114.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117361.7 ENSMUSP00000112681.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117361.7Link to Ensembl Protein Viewer:ENSMUSP00000112681.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117361Re-query CCDS DB by Protein ID:ENSMUSP00000112681
Original member Current member EBI ENSMUST00000121888.7 ENSMUSP00000112895.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121888.7Link to Ensembl Protein Viewer:ENSMUSP00000112895.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121888Re-query CCDS DB by Protein ID:ENSMUSP00000112895
Original member Current member EBI ENSMUST00000119043.7 ENSMUSP00000113357.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119043.7Link to Ensembl Protein Viewer:ENSMUSP00000113357.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119043Re-query CCDS DB by Protein ID:ENSMUSP00000113357
Original member Current member EBI ENSMUST00000118313.7 ENSMUSP00000113735.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118313.7Link to Ensembl Protein Viewer:ENSMUSP00000113735.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118313Re-query CCDS DB by Protein ID:ENSMUSP00000113735
Original member Current member EBI ENSMUST00000121808.7 ENSMUSP00000113841.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121808.7Link to Ensembl Protein Viewer:ENSMUSP00000113841.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121808Re-query CCDS DB by Protein ID:ENSMUSP00000113841
Original member Current member EBI ENSMUST00000234194.1 ENSMUSP00000157017.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234194.1Link to Ensembl Protein Viewer:ENSMUSP00000157017.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234194Re-query CCDS DB by Protein ID:ENSMUSP00000157017
Original member Current member EBI ENSMUST00000234871.1 ENSMUSP00000157342.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234871.1Link to Ensembl Protein Viewer:ENSMUSP00000157342.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234871Re-query CCDS DB by Protein ID:ENSMUSP00000157342
Original member Current member NCBI NM_001252490.1 NP_001239419.1 Accepted alive Link to Nucleotide Sequence:NM_001252490.1Link to Protein Sequence:NP_001239419.1Re-query CCDS DB by Nucleotide ID:NM_001252490Re-query CCDS DB by Protein ID:NP_001239419Link to BLAST:NP_001239419.1
Original member NCBI NM_001252491.1 NP_001239420.1 Updated not alive Link to Nucleotide Sequence:NM_001252491.1Link to Protein Sequence:NP_001239420.1Re-query CCDS DB by Nucleotide ID:NM_001252491Re-query CCDS DB by Protein ID:NP_001239420
Current member NCBI NM_001252491.2 NP_001239420.1 Accepted alive Link to Nucleotide Sequence:NM_001252491.2Link to Protein Sequence:NP_001239420.1Re-query CCDS DB by Nucleotide ID:NM_001252491Re-query CCDS DB by Protein ID:NP_001239420Link to BLAST:NP_001239420.1
Original member Current member NCBI NM_001252492.1 NP_001239421.1 Accepted alive Link to Nucleotide Sequence:NM_001252492.1Link to Protein Sequence:NP_001239421.1Re-query CCDS DB by Nucleotide ID:NM_001252492Re-query CCDS DB by Protein ID:NP_001239421Link to BLAST:NP_001239421.1
Original member Current member NCBI NM_001252493.1 NP_001239422.1 Accepted alive Link to Nucleotide Sequence:NM_001252493.1Link to Protein Sequence:NP_001239422.1Re-query CCDS DB by Nucleotide ID:NM_001252493Re-query CCDS DB by Protein ID:NP_001239422Link to BLAST:NP_001239422.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239419.1 437 Q91XL9-2 437 100% 0 0
NP_001239420.1 437 Q91XL9-2 437 100% 0 0
NP_001239421.1 437 Q91XL9-2 437 100% 0 0
NP_001239422.1 437 Q91XL9-2 437 100% 0 0

Chromosomal Locations for CCDS 57114.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12756205 12756307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12757608 12757698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12758767 12758890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12759399 12759515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12762566 12762692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12762909 12762998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12763482 12763589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12766803 12766985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12768538 12768635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12771299 12771433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12788320 12788395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12819505 12819566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGTCTGAAGGAAAAGACTGTGGTGGGGGAGATGCGCTCTCCAATGGCATCAAAAAGCACAGAACAAGCC
TGCCATCACCTATGTTCTCCAGAAACGATTTCAGCATCTGGAGCATCCTCAGAAAATGCATTGGGATGGA
ACTGTCCAAGATCACAATGCCAGTGATATTTAATGAGCCTCTGAGCTTCCTGCAGCGGCTAACTGAATAC
ATGGAGCACACGTACCTCATCCACAAAGCCAGTTCACTTTCTGATCCTGTGGAAAGGATGCAGTGTGTGG
CTGCATTTGCTGTGTCTGCTGTCGCCTCTCAGTGGGAGCGCACCGGAAAGCCCTTCAACCCGCTTCTGGG
AGAGACTTATGAATTAGTTCGAGATGACCTTGGGTTTAGGCTCATCTCAGAACAGGTCAGCCATCATCCC
CCAATCAGTGCATTCCATGCAGAAGGGCTCAACAATGACTTCATCTTCCATGGCTCAATTTACCCCAAAC
TGAAGTTCTGGGGCAAGAGTGTAGAAGCAGAGCCTAAAGGAACCATCACCTTGGAGCTTTTAGACCACAA
CGAAGCATACACATGGACAAACCCCACCTGTTGTGTGCATAACATCATCGTGGGCAAGCTCTGGATTGAA
CAGTATGGCAACGTGGAAATCATAAACCACAAGACTGGGGACAAATGTGTGCTGAATTTTAAGCCATGTG
GTCTTTTTGGCAAGGAATTACACAAAGTTGAAGGCTACATACAAGATAAAAGCAAAAAGAAGCTCTGTGC
TCTCTATGGGAAGTGGACTGAGTGCTTGTACAGCGTAGACCCTGCCACTTTTGATGCTTACAAAAAAAAT
GATAAGAAAAACACAGAAGAGAAGAAGAACAGCAAACAGACAAGCTCATCTGAGGAGTCTGATGAAATGC
CAGTGCCAGATTCCGAGAGCGTATTCATTATCCCTGGAAGTGTGCTCCTGTGGCGGATAGCCCCGCGGCC
TCCCAACTCTGCTCAGATGTATAACTTTACCAGCTTTGCCATGGTTTTGAATGAAGTCGACAAGGAGATG
GAGAGTGTGATTCCCAAGACTGACTGCAGGCTACGGCCTGACATCAGAGCCATGGAGAACGGAGAGATAG
ATCTAGCTAGTGAAGAAAAGAAACGGCTTGAGGAAAAGCAAAGAGCAGCCCGCAAGAACAGGTCCAAGTC
GGAAGAGGACTGGAAGACAAGGTGGTTCCATCAAGGTCCTAACCCCTACAGTGGAGCACAGGACTGGATT
TATTCTGGCAGCTACTGGGACAGAAACTACTTCAATTTGCCTGATATTTATTAA

Translation (437 aa):
MSEGKDCGGGDALSNGIKKHRTSLPSPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEY
MEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHP
PISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLDHNEAYTWTNPTCCVHNIIVGKLWIE
QYGNVEIINHKTGDKCVLNFKPCGLFGKELHKVEGYIQDKSKKKLCALYGKWTECLYSVDPATFDAYKKN
DKKNTEEKKNSKQTSSSEESDEMPVPDSESVFIIPGSVLLWRIAPRPPNSAQMYNFTSFAMVLNEVDKEM
ESVIPKTDCRLRPDIRAMENGEIDLASEEKKRLEEKQRAARKNRSKSEEDWKTRWFHQGPNPYSGAQDWI
YSGSYWDRNYFNLPDIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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