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Report for CCDS57115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57115.1 Public Mus musculus 18 Osbpl1a 23 108 98 CCDS HistoryNCBI Gene:64291Re-query CCDS DB by CCDS ID:57115.1Re-query CCDS DB by GeneID:64291See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57115.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119512.7 ENSMUSP00000113914.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119512.7Link to Ensembl Protein Viewer:ENSMUSP00000113914.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119512Re-query CCDS DB by Protein ID:ENSMUSP00000113914
Original member Current member NCBI NM_001252489.1 NP_001239418.1 Accepted alive Link to Nucleotide Sequence:NM_001252489.1Link to Protein Sequence:NP_001239418.1Re-query CCDS DB by Nucleotide ID:NM_001252489Re-query CCDS DB by Protein ID:NP_001239418Link to BLAST:NP_001239418.1

Chromosomal Locations for CCDS 57115.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12756205 12756307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12757608 12757698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12758767 12758890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12759399 12759515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12762566 12762692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12762909 12762998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12763482 12763589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12766803 12766985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12768538 12768635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12771299 12771433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12788320 12788395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12819505 12819661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12841184 12841346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12871078 12871182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGCTTCCATCGTTTCTTCAGAAAGCTGATATTGTCTCCGAAGCTTCTAGAGAGACTTGTGTGGCGTTGA
ATGACTGTCTTAATCTCTTCACTAAACAGGAAGGGGTGAGGAATTTTAAATTGGAACAGGAGCAAGAAAA
AAACAAAATTTTGTCAGAAGCACTGGAGACTTTAGCCACTGAGCATCATGAACTAGAACGATCCCTGGTT
GAAGGATCCCCGCCTGTCAGCATCCTTAGTGAGGAGGAGTTCTATGATGCACTGTCAGGTTCCGAGTCCG
AGGGGTCGCTGACTTGCCTGGAAGCTGTGACAGCACACTCCTTTGAAGAGAACGAAGTGCCTGGGAGCAG
CGGAAAGCACAGAATGTCTGAAGGAAAAGACTGTGGTGGGGGAGATGCGCTCTCCAATGGCATCAAAAAG
CACAGAACAAGCCTGCCATCACCTATGTTCTCCAGAAACGATTTCAGCATCTGGAGCATCCTCAGAAAAT
GCATTGGGATGGAACTGTCCAAGATCACAATGCCAGTGATATTTAATGAGCCTCTGAGCTTCCTGCAGCG
GCTAACTGAATACATGGAGCACACGTACCTCATCCACAAAGCCAGTTCACTTTCTGATCCTGTGGAAAGG
ATGCAGTGTGTGGCTGCATTTGCTGTGTCTGCTGTCGCCTCTCAGTGGGAGCGCACCGGAAAGCCCTTCA
ACCCGCTTCTGGGAGAGACTTATGAATTAGTTCGAGATGACCTTGGGTTTAGGCTCATCTCAGAACAGGT
CAGCCATCATCCCCCAATCAGTGCATTCCATGCAGAAGGGCTCAACAATGACTTCATCTTCCATGGCTCA
ATTTACCCCAAACTGAAGTTCTGGGGCAAGAGTGTAGAAGCAGAGCCTAAAGGAACCATCACCTTGGAGC
TTTTAGACCACAACGAAGCATACACATGGACAAACCCCACCTGTTGTGTGCATAACATCATCGTGGGCAA
GCTCTGGATTGAACAGTATGGCAACGTGGAAATCATAAACCACAAGACTGGGGACAAATGTGTGCTGAAT
TTTAAGCCATGTGGTCTTTTTGGCAAGGAATTACACAAAGTTGAAGGCTACATACAAGATAAAAGCAAAA
AGAAGCTCTGTGCTCTCTATGGGAAGTGGACTGAGTGCTTGTACAGCGTAGACCCTGCCACTTTTGATGC
TTACAAAAAAAATGATAAGAAAAACACAGAAGAGAAGAAGAACAGCAAACAGACAAGCTCATCTGAGGAG
TCTGATGAAATGCCAGTGCCAGATTCCGAGAGCGTATTCATTATCCCTGGAAGTGTGCTCCTGTGGCGGA
TAGCCCCGCGGCCTCCCAACTCTGCTCAGATGTATAACTTTACCAGCTTTGCCATGGTTTTGAATGAAGT
CGACAAGGAGATGGAGAGTGTGATTCCCAAGACTGACTGCAGGCTACGGCCTGACATCAGAGCCATGGAG
AACGGAGAGATAGATCTAGCTAGTGAAGAAAAGAAACGGCTTGAGGAAAAGCAAAGAGCAGCCCGCAAGA
ACAGGTCCAAGTCGGAAGAGGACTGGAAGACAAGGTGGTTCCATCAAGGTCCTAACCCCTACAGTGGAGC
ACAGGACTGGATTTATTCTGGCAGCTACTGGGACAGAAACTACTTCAATTTGCCTGATATTTATTAA

Translation (558 aa):
MLPSFLQKADIVSEASRETCVALNDCLNLFTKQEGVRNFKLEQEQEKNKILSEALETLATEHHELERSLV
EGSPPVSILSEEEFYDALSGSESEGSLTCLEAVTAHSFEENEVPGSSGKHRMSEGKDCGGGDALSNGIKK
HRTSLPSPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVER
MQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGS
IYPKLKFWGKSVEAEPKGTITLELLDHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGDKCVLN
FKPCGLFGKELHKVEGYIQDKSKKKLCALYGKWTECLYSVDPATFDAYKKNDKKNTEEKKNSKQTSSSEE
SDEMPVPDSESVFIIPGSVLLWRIAPRPPNSAQMYNFTSFAMVLNEVDKEMESVIPKTDCRLRPDIRAME
NGEIDLASEEKKRLEEKQRAARKNRSKSEEDWKTRWFHQGPNPYSGAQDWIYSGSYWDRNYFNLPDIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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