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Report for CCDS57207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57207.1 Public Mus musculus 3 Dcun1d1 23 108 98 CCDS HistoryNCBI Gene:114893Re-query CCDS DB by CCDS ID:57207.1Re-query CCDS DB by GeneID:114893See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108182.9 ENSMUSP00000103817.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108182.9Link to Ensembl Protein Viewer:ENSMUSP00000103817.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000108182Re-query CCDS DB by Protein ID:ENSMUSP00000103817
Original member Current member NCBI NM_001205361.1 NP_001192290.1 Accepted alive Link to Nucleotide Sequence:NM_001205361.1Link to Protein Sequence:NP_001192290.1Re-query CCDS DB by Nucleotide ID:NM_001205361Re-query CCDS DB by Protein ID:NP_001192290Link to BLAST:NP_001192290.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192290.1 259 Q9QZ73 259 100% 0 0

Chromosomal Locations for CCDS 57207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 35895620 35895699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35897464 35897560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35897793 35897875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35916220 35916350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35919001 35919169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35920971 35921187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 35932785 35932787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGAACAAGTTGAAATCATCGCAGAAGGATAAAGTTCGTCAGTTTATGATCTTCACACAATCTAGTGAGA
AAACTGCAGTAAGTTGTCTTTCTCAAAATGACTGGAAGTTAGATGTTGCAACAGATAATTTTTTTCAAAA
TCCAGAACTTTATATACGGGAGAGTGTAAAAGGATCGTTGGACAGGAAGAAGTTAGAGCAACTGTACACT
AGATACAAAGACCCTCAGGATGAAAATAAAATTGGAATAGATGGTATACAGCAGTTCTGTGATGATCTGG
CCCTCGATCCAGCCAGCATCAGTGTGTTGATCATTGCATGGAAGTTCAGGGCGGCCACACAGTGCGAGTT
CTCCAAACAGGAGTTCATGGATGGCATGACAGAGTTAGGATGTGACAGCATAGAAAAACTAAAGGCCCAA
ATACCCAAGATGGAACAAGAATTGAAAGAACCAGGACGATTTAAGGATTTTTACCAGTTTACTTTTAATT
TTGCAAAGAATCCAGGACAAAAAGGATTAGATCTAGAAATGGCCATTGCTTACTGGAACTTAGTGCTTAA
TGGAAGATTTAAATTCTTAGACTTATGGAATAAATTTTTGTTGGAGCATCATAAACGATCAATACCAAAA
GACACGTGGAATCTTCTGTTAGACTTCAGTTCAATGATTGCAGATGACATGTCCAATTATGATGAAGAAG
GAGCATGGCCTGTCCTTATTGATGACTTTGTGGAATTTGCACGCCCTCAAATTGCTGGGACAAAAAGTAC
AACAGTGTAG

Translation (259 aa):
MNKLKSSQKDKVRQFMIFTQSSEKTAVSCLSQNDWKLDVATDNFFQNPELYIRESVKGSLDRKKLEQLYT
RYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGCDSIEKLKAQ
IPKMEQELKEPGRFKDFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFKFLDLWNKFLLEHHKRSIPK
DTWNLLLDFSSMIADDMSNYDEEGAWPVLIDDFVEFARPQIAGTKSTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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