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Report for CCDS57228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57228.1 Public Mus musculus 3 Lce3d 23 108 98 CCDS HistoryNCBI Gene:630994Re-query CCDS DB by CCDS ID:57228.1Re-query CCDS DB by GeneID:630994See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059053.10 ENSMUSP00000130993.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059053.10Link to Ensembl Protein Viewer:ENSMUSP00000130993.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000059053Re-query CCDS DB by Protein ID:ENSMUSP00000130993
Original member NCBI NM_001270426.1 NP_001257355.1 Updated not alive Link to Nucleotide Sequence:NM_001270426.1Link to Protein Sequence:NP_001257355.1Re-query CCDS DB by Nucleotide ID:NM_001270426Re-query CCDS DB by Protein ID:NP_001257355
Current member NCBI NM_001270426.2 NP_001257355.1 Accepted alive Link to Nucleotide Sequence:NM_001270426.2Link to Protein Sequence:NP_001257355.1Re-query CCDS DB by Nucleotide ID:NM_001270426Re-query CCDS DB by Protein ID:NP_001257355Link to BLAST:NP_001257355.1

Chromosomal Locations for CCDS 57228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92958080 92958376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTTCCCCAAAGTGCTCCCCAA
AGTGCCCCCCAAAGAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGG
CTGCAGTGTCCCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGG
CGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCT
CTGGGGGCTGCTGCTGA

Translation (98 aa):
MSCQQSQKQCQPPPKCPSPKCSPKCPPKSTTQCLPAASSCCATNSGGCSVPSSEGGCCLSHHRRRSHRCR
RRSSSSCDRGSGQQSGGSGCGHSSGGCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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