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Report for CCDS57233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57233.1 Public Mus musculus 3 Mindy1 23 108 98 CCDS HistoryNCBI Gene:75007Re-query CCDS DB by CCDS ID:57233.1Re-query CCDS DB by GeneID:75007See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57233.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107187.8 ENSMUSP00000102805.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107187.8Link to Ensembl Protein Viewer:ENSMUSP00000102805.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107187Re-query CCDS DB by Protein ID:ENSMUSP00000102805
Original member Current member NCBI NM_199475.1 NP_955769.1 Accepted alive Link to Nucleotide Sequence:NM_199475.1Link to Protein Sequence:NP_955769.1Re-query CCDS DB by Nucleotide ID:NM_199475Re-query CCDS DB by Protein ID:NP_955769Link to BLAST:NP_955769.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955769.1 468 Q76LS9-1 468 100% 0 0

Chromosomal Locations for CCDS 57233.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95287948 95288400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95291022 95291079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95291480 95291544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95292125 95292283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95292625 95292727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95293625 95293767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95294795 95294986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95295273 95295425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95295651 95295731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGAACAACCTCAGACTGAGAACCCAGCCCCTAGTAAGGCCACTAGTGCAGAAACTGTTGAATCTGAAA
ACCATGAGGCCCTGTCTGGACCAGAGAAGCATCCTCAGGACAAGGATGGTGCAGATGCTGATGGAGCAGC
TGGAGAACAGGAGCCAGGAGACCAAACTTTGCCACCAGCCCAGGATGGTGAAAATCTTGAGTGTCCTCCT
CCTGAAGCTAGCTCAAGTCCTCCTGGGCCAGCTTGTGGGACGTCACCTAAGGTAGAGACAGCAGAGGTGT
GTTCCAGGCCACAGGAACTTCCCCAGTCCCCCAGGATCCAACAGCCTGAGCTAGATTTCTACTGTGTCAA
GTGGATCCCCTGGAAGGGAGAACGGACCCCGATCATCACCCAGAGCACCAATGGTCCGTGTCCTCTTCTA
GCCATCATGAACATCCTTTTTCTTCAGTGGAAGGTGAAGCTGCCCCCTCAGAAGGAAGTGATCACATCAG
ATGAGCTCCTGACACACCTTGGAAACTGCCTTCTGTCCATCAAACCCCAAGAGAAGTCTGAGGGCCTTCA
ACTTAACTTTCAGCAGAATGTGGACGATGCAATGACGGTGCTCCCGAAACTGGCCACAGGTCTGGACGTC
AATGTGCGATTCACGGGCGTCTCCGACTTTGAGTATACGCCGGAATGCAGCATCTTTGACTTGCTGGGAA
TACCTCTATACCATGGCTGGCTGGTGGATCCACAGAGTCCCGAGGCTGTGAGTGCTGTTGGGAAACTGAG
TTACAACCAGCTGGTAGAGAAGATCATCACCTGTAAACACTCTAGTGACTCCAACCTCGTGACAGAAGGC
TTGGTTGCGGAGCAGTTCCTGGAGACCACTGCGGCACAGTTGACCTACCATGGCCTGTGCGAGCTCACAG
CAGCTGCCACGGAAGATGAACTTAGTGTCTTCTTTCGAAACAACCACTTCAGCACGATGACTAAGCACAA
GAGTCACCTGTACCTACTGGTCACTGACCAAGGTTTTCTACAGGAGGAGCAGGTGGTATGGGAGAGCTTG
CATAACGTGGATGGTGACAGCTGCTTTTGTGACTCGGACTTCCACCTAAGTCATTCCCTAGGCAAAAGCC
ATGGAGCAGAAGGTGGGGGTGGCTCTCCAGAGAAGCAGCTGCAAGTGGACCAGGACTACCTTATTGCCTT
ATCCCTGCAGCAGCAGCAGCAGCCACAAGGCACGTTGGGCCTCAGTGACCTGGAACTGGCCCAACAACTT
CAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTGCGAACAAGGGCTCCTTCGCCCCAGGGGA
GAGGAGCCACATCTGGACGTCCAGCTGGAGAGCGGCGGCAGAGGTCAAAGACTGAGTCAGACTGTGTTCT
GCTCTGA

Translation (468 aa):
MEQPQTENPAPSKATSAETVESENHEALSGPEKHPQDKDGADADGAAGEQEPGDQTLPPAQDGENLECPP
PEASSSPPGPACGTSPKVETAEVCSRPQELPQSPRIQQPELDFYCVKWIPWKGERTPIITQSTNGPCPLL
AIMNILFLQWKVKLPPQKEVITSDELLTHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDV
NVRFTGVSDFEYTPECSIFDLLGIPLYHGWLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEG
LVAEQFLETTAAQLTYHGLCELTAAATEDELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESL
HNVDGDSCFCDSDFHLSHSLGKSHGAEGGGGSPEKQLQVDQDYLIALSLQQQQQPQGTLGLSDLELAQQL
QQEEYQQQQAVQPVRTRAPSPQGRGATSGRPAGERRQRSKTESDCVLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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