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Report for CCDS57317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57317.1 Public Mus musculus 4 Faap20 23 108 98 CCDS HistoryNCBI Gene:67513Re-query CCDS DB by CCDS ID:57317.1Re-query CCDS DB by GeneID:67513See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178473.7 ENSMUSP00000137116.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178473.7Link to Ensembl Protein Viewer:ENSMUSP00000137116.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178473Re-query CCDS DB by Protein ID:ENSMUSP00000137116
Original member Current member NCBI NM_001190445.1 NP_001177374.1 Accepted alive Link to Nucleotide Sequence:NM_001190445.1Link to Protein Sequence:NP_001177374.1Re-query CCDS DB by Nucleotide ID:NM_001190445Re-query CCDS DB by Protein ID:NP_001177374Link to BLAST:NP_001177374.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177374.1 186 Q3UN58-1 186 100% 0 0

Chromosomal Locations for CCDS 57317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155250001 155250062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155250506 155250650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155250756 155251036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155256135 155256207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGAGGAGGAGCGGAGACTGCGGGGGAGGCTGAGCCGTCGGAGGCCGCCCGCGGGGGGCGGGCCCCCTA
ACTGCCGCCCTTGGTTTCTCTCGGAGGGAAGTAAGAGTGAGCCCTGGGCTGCTCTGTTGCGCAGCACCGT
GAGCGGGACCGCGGATTGGACCCCGAACCGTCAGCCATTACCACCGCTGCCTGCTTTTCCCAGCCAGGAG
TCTCTACCTGACCCAGAGTCCACTGTGCCTCCTGAGGCCTTCACTGTGGGATCCAAGACTTTCTCCTGGA
CGCCTTTGCCACCTGCCCTTCGTGGCTCTGGAAGCTCCCGCCACCTGTTCTGTGAACCTGAAGGCTCCCT
GGGGTCACCTACTCCATCCCTGAAAGGATGCCCTGCACTAAATTCTGGTCGAACTCCCAGCGCCCAGGAG
TGTGTGCCTGTGCAGAGTCCACTTGCGTTGCTGAGTTGCCCGTTGTGCCAGAAGGCGTTTGACCCGAAGC
TGACCCAGCTAGATGTGGATAGCCACCTTGCTCAGTGCTTGGCTGAGTGCACCGAAGATGTGGTGTGGTG
A

Translation (186 aa):
MEEERRLRGRLSRRRPPAGGGPPNCRPWFLSEGSKSEPWAALLRSTVSGTADWTPNRQPLPPLPAFPSQE
SLPDPESTVPPEAFTVGSKTFSWTPLPPALRGSGSSRHLFCEPEGSLGSPTPSLKGCPALNSGRTPSAQE
CVPVQSPLALLSCPLCQKAFDPKLTQLDVDSHLAQCLAECTEDVVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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