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Report for CCDS57356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57356.1 Public Mus musculus 5 Odaph 23 108 98 CCDS HistoryNCBI Gene:381651Re-query CCDS DB by CCDS ID:57356.1Re-query CCDS DB by GeneID:381651See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57356.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178614.2 ENSMUSP00000136951.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178614.2Link to Ensembl Protein Viewer:ENSMUSP00000136951.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178614Re-query CCDS DB by Protein ID:ENSMUSP00000136951
Original member Current member NCBI NM_001177577.1 NP_001171048.1 Accepted alive Link to Nucleotide Sequence:NM_001177577.1Link to Protein Sequence:NP_001171048.1Re-query CCDS DB by Nucleotide ID:NM_001177577Re-query CCDS DB by Protein ID:NP_001171048Link to BLAST:NP_001171048.1

Chromosomal Locations for CCDS 57356.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 91987495 91987558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91994645 91994961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGGCTCCAGCTTTCCATGTCTCCTGGTTACTGGTCAGCTGGTTGGTGGTAACTACAGCAGAAGGACAAG
ATGTAGTCACCCCTCCTGGCGGCTCACAAAATAACGCAAAGCCTACAGACTGCCAGATCTTCACACTCAC
TCCTCCGCCCACCACAAGGAATCTGGTAACAAGGGCCCAGCCCATCCCAAGGACACCCACGTTTTCTTTT
CCACCAAGGGGGCCGGGCTTCTCCCCGAGGTTCCCTTTCTTCCTTCCAAACAACCGCCGCTTCCAGTTCT
GGCCATTCTACAGGCCGCGAGGTAGACTGATCCCTTGGCGACTCATCCTTAGAAGACAGCAGCAGAGCGG
AAGCTCATCTGAGGAGAGCAGGGAGAACTGA

Translation (126 aa):
MAPAFHVSWLLVSWLVVTTAEGQDVVTPPGGSQNNAKPTDCQIFTLTPPPTTRNLVTRAQPIPRTPTFSF
PPRGPGFSPRFPFFLPNNRRFQFWPFYRPRGRLIPWRLILRRQQQSGSSSEESREN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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