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Report for CCDS57529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57529.1 Public Mus musculus 7 Actmap 23 108 98 CCDS HistoryNCBI Gene:414069Re-query CCDS DB by CCDS ID:57529.1Re-query CCDS DB by GeneID:414069See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57529.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179391.7 ENSMUSP00000137189.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179391.7Link to Ensembl Protein Viewer:ENSMUSP00000137189.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179391Re-query CCDS DB by Protein ID:ENSMUSP00000137189
Original member Current member NCBI NM_001243888.1 NP_001230817.1 Accepted alive Link to Nucleotide Sequence:NM_001243888.1Link to Protein Sequence:NP_001230817.1Re-query CCDS DB by Nucleotide ID:NM_001243888Re-query CCDS DB by Protein ID:NP_001230817Link to BLAST:NP_001230817.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230817.1 361 J3QPC3-1 361 100% 0 0

Chromosomal Locations for CCDS 57529.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27197014 27197366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27200554 27200622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27201020 27201144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27202408 27202537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27202627 27202697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27203756 27204093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGACTTCTCCATGCTCTTTCCCCCTAAAACCCACAATCTCTCCAATAATTCATGAGACCCCAGACACCA
ACATTCCACCTCCTTTACCTCTAAATCCCCCGGACCTAGCTTTACCATCCCCTCCTTGTAGTCTCCATAC
ATCTATTTCATCCCCACTGCCGCCCCCTCCCCCCCCTCCTGCTCCTCCCCCTCCCCCTCCCCCTCCCCCT
CTACCCTCTGCTGTGGAGCCTGTTCTCCCTCATGTCTATGGCCTGAAGAACAGCCAGCTCCTGAAGGAGG
CCTTAGAGAAGGCTGGCCCAGCCCCCAAAGGCAAAGAGGATGTGAAGAGGCTCCTGAAGCTGCACAAGGA
CCGGTTTCGAAGTGACCTGCAGTGGATCCTCTTTTGTGCTGACCTGCCATCATGCATCCAGGAAGGCCCT
CAGTGTGGACTGGTGGCCTTGTGGATGGCAGAAGCTCTTCTGTCAACACCTGACAGCGTCTCTCTGGAAA
GACTAGTGCAGGTGGCCAAGGAGAGAGGCTACACCGCACAGGGAGAAATGTTCTCAGTGGCTGACATGGC
CAAACTGGCCCAGGAGACTTTGGACTGCCAGGCTGAGCTCCTGTGTGGTGGCTTGGGTGGTCCCAACAGA
GAACGAGTTCTACAGCACCTCATCACTGGACATCCCCTGCTCATTCCCTATGATGAGGATTTCAACCACG
AGCCGTGTCAAAAGAAAGGCCATAAGGCCCACTGGGCAGTGAGTGCAGGGGTCCTGATAGGTGTGCAGAA
TGTGCCAAGCCCTGGCTACATTGAAGACTCTGAGCTACCAGGCCTCTTCCACCCAGTGCCTGGTGCACCC
CACCAACCACCATCCTTCCCAGAGGAAAGCTCCCCAGGTGCCCTCTTCCTTCTCTCCAAGCAGGGCAAGA
GTTGGCATTACCAGCTGTGGGACTACAGCCAAGTCCGGGAGAGCAACCTGCAGCTGACAGACTTCTCACC
CGCAAGGGCTGCCGATGGACAGGTGTACGTGGTACCTGCTGGTGGGGTAGAGGCTGGCCTCTGTGGCCAG
GCCCTGCTGCTCAGACCACAGGAGGGAAGCCATTAG

Translation (361 aa):
MTSPCSFPLKPTISPIIHETPDTNIPPPLPLNPPDLALPSPPCSLHTSISSPLPPPPPPPAPPPPPPPPP
LPSAVEPVLPHVYGLKNSQLLKEALEKAGPAPKGKEDVKRLLKLHKDRFRSDLQWILFCADLPSCIQEGP
QCGLVALWMAEALLSTPDSVSLERLVQVAKERGYTAQGEMFSVADMAKLAQETLDCQAELLCGGLGGPNR
ERVLQHLITGHPLLIPYDEDFNHEPCQKKGHKAHWAVSAGVLIGVQNVPSPGYIEDSELPGLFHPVPGAP
HQPPSFPEESSPGALFLLSKQGKSWHYQLWDYSQVRESNLQLTDFSPARAADGQVYVVPAGGVEAGLCGQ
ALLLRPQEGSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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