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Report for CCDS57590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57590.1 Public Mus musculus 7 D7Ertd443e 23 108 98 CCDS HistoryNCBI Gene:71007Re-query CCDS DB by CCDS ID:57590.1Re-query CCDS DB by GeneID:71007See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094002.9 ENSMUSP00000091539.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094002.9Link to Ensembl Protein Viewer:ENSMUSP00000091539.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094002Re-query CCDS DB by Protein ID:ENSMUSP00000091539
Original member Current member NCBI NM_001081331.2 NP_001074800.1 Accepted alive Link to Nucleotide Sequence:NM_001081331.2Link to Protein Sequence:NP_001074800.1Re-query CCDS DB by Nucleotide ID:NM_001081331Re-query CCDS DB by Protein ID:NP_001074800Link to BLAST:NP_001074800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074800.1 644 D2J0Y4 644 100% 0 0

Chromosomal Locations for CCDS 57590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 134266613 134266651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134266738 134266837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134270194 134270257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134293228 134293405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134294965 134295143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134298116 134298400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134348712 134349801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1935 nt):
ATGATATCACCTGTGGTCATTTCCCGGCTGATTGATGAAAAGAAATCTATGGAAAATGGAGCAATATTGC
CACAAGCCATTGCTCAGCCTCAGCTGTGTCCCACAAAGCCAGCTTTGGCCAGGCGCGATGGAGTGAGCAT
GCACAGGCGATTTGCTTTATCTCCAGACAGACTGGGAATTTTGACTCCATCAGATGATCAAGGACTGGAG
ACAGAACCGCTGTCTACAGGGGACAATCTAGGCAAAGGTTCCCACAGCGGTTTCTCGTCTATCACCATTA
CTGCCCGACGTGTGGGCCCTCCAGCCAGCAGCTTGGTATGGGACACTTTTAGGGACCCACTGTGTCCCAA
GTGCAAAGCCAAGGATGCTCTGTTCCAAGAGCCCCCAGTTCTGGCTGGTGATGCCCATCTCTGTCAGCAC
AATAGACCCTTCACCTGTACAGAGTCCCCCAGCAATGGCTCCGTAGAGGGGATGAAGGTTTTCCAGGCTC
ACTCAAGGCTGAGTGCAAGGCAGGACTACTGGGTCACCCACACGAATGACAATGAGGACAGTTTTTCTTC
AGACAATTCACCATCGAGAAAAGTCCCACTGGTGTTCAGTTCTTGTGTCCACTTCCGGGTGTCTCAGCAG
TGTCCCAATGCCATTTACTATTTGGACAAGTCTCTTTCTGTTCCCCTTGAGCGACCTCAAATTGCTAGCC
CCAAAATGCACAGGTCTGTCCTGTCTCTCAGCCTCCGCTGTAGTTCCCACCAGTTAACAGCAGATGGAGT
AGACAGCTCAGCTAATGGAGAGCCAATCAGCACAGCTCTATCACAGGAACTCTCGGAGGGAAAGCAGGAC
CTCCTAGGTCCACAATGGGGCCAGCCACAAGGTGGTCACTGGAAGGAGAGCCCAGCATTGGTGCCAGTAC
ATTTGGGGAGTGGCACATGCCCTCGGACTGGCTCCCCTCCACTGGAAAATGTCAAATTTGCAGACGTGGG
AAGGAACCAGGTCCCAGTACGAAAGGAGAAAGAGGACCATGCAACATGTACCAGTAGCAGCCACACCAAC
CAACTCTCCATCCATATTCCCGGCTGGAGTTACAGGGCTGAAACAAAAGTACTTTCTGGAAGCAAGAAGC
AGCAGCAAGAAGCACAAAGAACTCTTCCTGCTTTCCCAGTGGGACAGAAGACCATTAAACACTTCCCTCC
TGAAGGGGACAGTTCACCAAGCAGTGATGGTCAACCTAGCATCCTTTCAGAGTCCAATGAGAGGCAACAC
CCATACTTCATGATACCCAGAGTCCCTCTGCCTGGGTTTTATTGCCCTTTACAAACTGGGTGTGCCTCTC
TGCAGGAAGATGGTGCTGTTCAGATAGAAACACACTTCCCCAAAGATTACACGTGCTGTGACTTGGTTGT
AAAACTAAAGGAATGTGAGAAGAACGAAGACCCCACTGTCACCCCTGAGCCCTCACCAGCAACCCCCTCT
CCATCAACCCCAGAGGGAGCACAGAGCTCTGACCCATCAGAAGATAGTTACGAGCCTCTGCTGGCAAGTT
CTATGACTTTGCAGGAAGCACTGGAAGTCCATAGACCTCAGTTCATTTCTCGCTCACAAGAACGGCTGCA
AAAGCTTAAGCGCATGGTACAGCAAAGGAAAACCCAACAAAAGGAGAGCCTGGGGCAGAAGCAGAGCCTA
CTTCCTGTCCGCGCCAACAAGAAGCAGTTCACCATTCCCCATCCTCTTAGTGATAACTTGTTCAAACCCA
AAGAAAGATGCATTTCAGAGAAGGAGATGCATATGAGATCTAAAAGAATCTATAATAATTTGCCGGAAGT
TAAAAAGAAAAAAGAAGAGCAGAAGAAAAGAATGATCTTACAGAGTAACCGGCTCCGAGCAGAAGTCTTC
AAAAAGCAATTACTGGACCAGCTCCTTCAAAGGAATGCAGTTTGA

Translation (644 aa):
MISPVVISRLIDEKKSMENGAILPQAIAQPQLCPTKPALARRDGVSMHRRFALSPDRLGILTPSDDQGLE
TEPLSTGDNLGKGSHSGFSSITITARRVGPPASSLVWDTFRDPLCPKCKAKDALFQEPPVLAGDAHLCQH
NRPFTCTESPSNGSVEGMKVFQAHSRLSARQDYWVTHTNDNEDSFSSDNSPSRKVPLVFSSCVHFRVSQQ
CPNAIYYLDKSLSVPLERPQIASPKMHRSVLSLSLRCSSHQLTADGVDSSANGEPISTALSQELSEGKQD
LLGPQWGQPQGGHWKESPALVPVHLGSGTCPRTGSPPLENVKFADVGRNQVPVRKEKEDHATCTSSSHTN
QLSIHIPGWSYRAETKVLSGSKKQQQEAQRTLPAFPVGQKTIKHFPPEGDSSPSSDGQPSILSESNERQH
PYFMIPRVPLPGFYCPLQTGCASLQEDGAVQIETHFPKDYTCCDLVVKLKECEKNEDPTVTPEPSPATPS
PSTPEGAQSSDPSEDSYEPLLASSMTLQEALEVHRPQFISRSQERLQKLKRMVQQRKTQQKESLGQKQSL
LPVRANKKQFTIPHPLSDNLFKPKERCISEKEMHMRSKRIYNNLPEVKKKKEEQKKRMILQSNRLRAEVF
KKQLLDQLLQRNAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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