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Report for CCDS57772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57772.1 Public Mus musculus X Tex16 23 108 98 CCDS HistoryNCBI Gene:83556Re-query CCDS DB by CCDS ID:57772.1Re-query CCDS DB by GeneID:83556See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000152343.7 ENSMUSP00000121926.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152343.7Link to Ensembl Protein Viewer:ENSMUSP00000121926.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000152343Re-query CCDS DB by Protein ID:ENSMUSP00000121926
Original member Current member EBI ENSMUST00000164272.2 ENSMUSP00000132926.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164272.2Link to Ensembl Protein Viewer:ENSMUSP00000132926.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164272Re-query CCDS DB by Protein ID:ENSMUSP00000132926
Original member Current member NCBI NM_001177389.1 NP_001170860.1 Accepted alive Link to Nucleotide Sequence:NM_001177389.1Link to Protein Sequence:NP_001170860.1Re-query CCDS DB by Nucleotide ID:NM_001177389Re-query CCDS DB by Protein ID:NP_001170860Link to BLAST:NP_001170860.1

Chromosomal Locations for CCDS 57772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 112240677 112241454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112243317 112243678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGAATCAGGTGGTGATAGCTACCACCCCACCACTAACTAAGGAGTTAGAAAGCACTGCCCTTGTAAAAC
CAAAAACTTCAGGGCTTCTTCGCATAGAGAAAATACCAATTAAGTATCTATGGGTCCCAGAATTTCAACG
CTTAGAAGTTACAGGAATTGCCAGTCCAGAGGAAAGGGGTAAAGGCACCGCAATACTTGTTGCTGGTGTT
CCTGGAAAGGAGGAGTTAGATGATACAGAAATTCCAACTTTGCACTTCACTGGGTTTGTACACCTGGAGG
CTTTAATAAATAAATGTTCACCATCCTCAGAATACAGTCGCCCAGGAACCCCAGGAAATCTGTGGATGGA
ATCTCCAGAAAATGCAGAGTCCCCAGGAAGTGATGATATGGAAGTAGCGAGAAGCATGTATCCTTTTAGA
GAAAGATCCATCTTTCGGCGTTCCTGGGCAGAGCTCTTAGAGGCACCACTAAACAGTGAGGGGCTCCATA
TTATCCAAACAGAACATATTCACAATGAAGAAAATAGAGATATGGGTTGCAACAAACTAACATTACAGGA
AGAGAATCAAGTAATCCCCCTTCCCAAGGATCAACATTTCCAGGCTTTGCAAGGCCCTTTCCCCTTGTTG
CCAGAGCGCCCTAAGCTCCAAAGGCAACGTAGTAGAAGCTTGCCAAGAAACAGTGAAGTCGGAGGCCAAT
ATTTAAATACACCTGAATTCAAAGGAAGTGCAGAAGAAACGCCCTTCTTCCCACGTGATCATAATTTACT
AACAGAAGAAAATATCAAGGAAAGACACAGCATGGAGGGAGCCTGGCAAAGAGTAATTCCATCTCATTCT
GGAGAACATTTTCCCATTATGCCAAGATTTGACAATTCTTCAATTCAAGGAAACTTTGGAATTCCTGAGG
ATAATTCTGCACGTCCCAGAGGCAATATGAGAATTCAGAGCAATGTCAATACTATCCCCATGGTTAATGT
TGGAATTCCCATAGATAATCCTCAAGTTCTTAAAGGCAATACTGGAGTTCCCAGGGGCAGTGGTTTTGGA
GTTTACATGGGCAATAGTGGTAGACCTTCTGGACATGTGGTATCTTCTCCACTTATTGAGCTCTCAAAGA
TAGGTGAACACCAGTTGTAA

Translation (379 aa):
MNQVVIATTPPLTKELESTALVKPKTSGLLRIEKIPIKYLWVPEFQRLEVTGIASPEERGKGTAILVAGV
PGKEELDDTEIPTLHFTGFVHLEALINKCSPSSEYSRPGTPGNLWMESPENAESPGSDDMEVARSMYPFR
ERSIFRRSWAELLEAPLNSEGLHIIQTEHIHNEENRDMGCNKLTLQEENQVIPLPKDQHFQALQGPFPLL
PERPKLQRQRSRSLPRNSEVGGQYLNTPEFKGSAEETPFFPRDHNLLTEENIKERHSMEGAWQRVIPSHS
GEHFPIMPRFDNSSIQGNFGIPEDNSARPRGNMRIQSNVNTIPMVNVGIPIDNPQVLKGNTGVPRGSGFG
VYMGNSGRPSGHVVSSPLIELSKIGEHQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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