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Report for CCDS58058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58058.1 Public Homo sapiens 1 SYT14 24 110 108 CCDS HistoryNCBI Gene:255928Re-query CCDS DB by CCDS ID:58058.1Re-query CCDS DB by GeneID:255928See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58058.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367015.5 ENSP00000355982.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367015.5Link to Ensembl Protein Viewer:ENSP00000355982.1Re-query CCDS DB by Nucleotide ID:ENST00000367015Re-query CCDS DB by Protein ID:ENSP00000355982
Original member Current member EBI ENST00000537238.5 ENSP00000437423.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537238.5Link to Ensembl Protein Viewer:ENSP00000437423.1Re-query CCDS DB by Nucleotide ID:ENST00000537238Re-query CCDS DB by Protein ID:ENSP00000437423
Original member Current member NCBI NM_001256006.3 NP_001242935.1 Accepted alive Link to Nucleotide Sequence:NM_001256006.3Link to Protein Sequence:NP_001242935.1Re-query CCDS DB by Nucleotide ID:NM_001256006Re-query CCDS DB by Protein ID:NP_001242935Link to BLAST:NP_001242935.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001242935.1 517 Q8NB59-3 517 100% 0 0

Chromosomal Locations for CCDS 58058.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 210013686 210013797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210021039 210021254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210094322 210094593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210100012 210100461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210155721 210155910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210160729 210161042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGCTGCTCCTTTTTCTCTATATTAATAAGAAGTTCTGTTTTGAAAATGTTGGCGGGTTTCCAGATCTTG
GTTCAGAATACAGTACAAGGAAGAATTCACAAGATAAAATTTATAATTCCTACATGGACAAAGATGAGCA
TGGTTCATCCTCTGAAAGTGAAGATGAAGCGCTGGGTAAATATCATGAGGCCTTATCCAGAACACACAAT
TCCAGACTACCACTGGCAGATTCTAGACAAAGGAACTATGCTTGGGAAACAAGGCAGAAATACAGTCCTC
TATCGGCAGAGTATGATGGATACAGTAGTGAAGCATCAATAGATGAAGGAAACTGCATTCAGAGAATGAG
AAGAACACCCCCGCTGGATGAATTGCAGCCACCACCATATCAGGATGACAGTGGTTCTCCCCATCTGTCA
TGTACACCCTCAGAAATTGGGGACAGTAAATGTGAATTTTCCCACTGCAGCAACAGTCCAAGATGCTCAT
ATAACAAGTGCCCAAGTGAAGGAAGCACAGGTCATGAAATAGAAAGTTTTCATAATAAAGGATATGAAGA
AGATGTTCCAAGTGACAGCACTGCAGTCCTGAGCCCTGAAGATATGTCAGCTCAAGGATCATCTTCGCAG
CTTCCTAAACCTTTTGATCCTGAGCCAGAAGCTAAATATGGCACACTGGATGTGACTTTTGACTATGACT
CACAAGAACAGAAGCTTCTGGTAACAGTGACAGCTGTCACAGACATCCCAACATATAACAGGACAGGTGG
CAACTCATGGCAAGTACACCTTGTTCTTCTACCTATAAAGAAACAGAGAGCAAAAACCAGCATCCAGAGA
GGACCATGCCCTGTCTTCACAGAAACATTTAAATTTAATCATGTTGAATCTGAGATGATTGGAAATTATG
CAGTTCGGTTTAGACTGTATGGTGTACATCGCATGAAAAAAGAAAAGATTGTGGGGGAAAAGATTTTTTA
TTTAACAAAATTGAATCTTCAAGGGAAAATGTCATTGCCTGTGATATTGGAACCTTCTTACAATCATTCT
GGCTGTGACTCCCAAATGAGCGTGTCAGAAATGTCGTGTAGTGAAAGTACATCCTCATGTCAGTCTCTTG
AACATGGCTCAGTTCCAGAAATTCTTATTGGCCTGCTTTATAATGCCACAACTGGAAGACTATCAGCAGA
AGTGATAAAAGGCAGCCACTTCAAAAATTTGGCAGCAAACAGACCACCCAATACATATGTTAAGTTAACT
CTACTGAATTCCATGGGTCAAGAGATGTCCAAATGCAAGACATCCATCCGCAGAGGGCAGCCAAATCCAG
TATATAAGGAAACTTTTGTCTTTCAAGTGGCCCTATTTCAGCTTTCTGATGTGACACTCATACTGTCTGT
GTATAACAAACGCAGCATGAAAAGAAAAGAGATGATAGGCTGGATTTCTTTAGGTCTCAACAGCTCTGGA
GAAGAAGAACTCAATCACTGGACTGAAATGAAAGAGTCAAAAGGACAGCAAGTATGTAGATGGCATGCGT
TGCTAGAGTCATGA

Translation (517 aa):
MLLLFLYINKKFCFENVGGFPDLGSEYSTRKNSQDKIYNSYMDKDEHGSSSESEDEALGKYHEALSRTHN
SRLPLADSRQRNYAWETRQKYSPLSAEYDGYSSEASIDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLS
CTPSEIGDSKCEFSHCSNSPRCSYNKCPSEGSTGHEIESFHNKGYEEDVPSDSTAVLSPEDMSAQGSSSQ
LPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQR
GPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHS
GCDSQMSVSEMSCSESTSSCQSLEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNTYVKLT
LLNSMGQEMSKCKTSIRRGQPNPVYKETFVFQVALFQLSDVTLILSVYNKRSMKRKEMIGWISLGLNSSG
EEELNHWTEMKESKGQQVCRWHALLES


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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