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Report for CCDS58112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58112.1 Public Homo sapiens 11 PGAP2 24 110 108 CCDS HistoryNCBI Gene:27315Re-query CCDS DB by CCDS ID:58112.1Re-query CCDS DB by GeneID:27315See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58112.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000463452.6 ENSP00000435223.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000463452.6Link to Ensembl Protein Viewer:ENSP00000435223.1Re-query CCDS DB by Nucleotide ID:ENST00000463452Re-query CCDS DB by Protein ID:ENSP00000435223
Original member Current member NCBI NM_001256240.2 NP_001243169.1 Accepted alive Link to Nucleotide Sequence:NM_001256240.2Link to Protein Sequence:NP_001243169.1Re-query CCDS DB by Nucleotide ID:NM_001256240Re-query CCDS DB by Protein ID:NP_001243169Link to BLAST:NP_001243169.1
Original member Current member NCBI NM_001346398.2 NP_001333327.1 Accepted alive Link to Nucleotide Sequence:NM_001346398.2Link to Protein Sequence:NP_001333327.1Re-query CCDS DB by Nucleotide ID:NM_001346398Re-query CCDS DB by Protein ID:NP_001333327Link to BLAST:NP_001333327.1
Original member Current member NCBI NM_001346405.1 NP_001333334.1 Accepted alive Link to Nucleotide Sequence:NM_001346405.1Link to Protein Sequence:NP_001333334.1Re-query CCDS DB by Nucleotide ID:NM_001346405Re-query CCDS DB by Protein ID:NP_001333334Link to BLAST:NP_001333334.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243169.1 254 Q9UHJ9-1 254 100% 0 0
NP_001333327.1 254 Q9UHJ9-1 254 100% 0 0
NP_001333334.1 254 Q9UHJ9-1 254 100% 0 0

Chromosomal Locations for CCDS 58112.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3811260 3811424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3823883 3824135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3824270 3824376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3825020 3825128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3825328 3825458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGTACCAGGTCCCACTACCACTGGATCGGGATGGGACCCTGGTACGGCTCCGCTTCACCATGGTGGCCC
TGGTCACGGTCTGCTGTCCACTTGTCGCCTTCCTCTTCTGCATCCTCTGGTCCCTGCTCTTCCACTTCAA
GGAGACAACGGCCACACACTGTGGGGTGCCCAATTACCTGCCCTCGGTGAGCTCAGCCATCGGCGGGGAG
GTGCCCCAGCGCTACGTGTGGCGTTTCTGCATCGGCCTGCACTCGGCGCCTCGCTTCTTGGTGGCCTTCG
CCTACTGGAACCACTACCTCAGCTGCACCTCCCCGTGTTCCTGCTATCGCCCGCTCTGCCGCCTCAACTT
CGGCCTCAATGTCGTGGAGAACCTCGCGTTGCTAGTGCTCACTTATGTCTCCTCCTCCGAGGACTTCACC
ATCCACGAAAATGCTTTCATTGTGTTCATTGCCTCATCCCTCGGGCACATGCTCCTCACCTGCATTCTCT
GGCGGTTGACCAAGAAGCACACAGTAAGTCAGGAGGATCGCAAGTCCTACAGCTGGAAACAGCGGCTCTT
CATCATCAACTTCATCTCCTTCTTCTCGGCGCTGGCTGTCTACTTTCGGCACAACATGTATTGTGAGGCT
GGAGTGTACACCATCTTTGCCATCCTGGAGTACACTGTTGTCTTAACCAACATGGCGTTCCACATGACGG
CCTGGTGGGACTTCGGGAACAAGGAGCTGCTCATAACCTCTCAGCCTGAGGAAAAGCGATTCTGA

Translation (254 aa):
MYQVPLPLDRDGTLVRLRFTMVALVTVCCPLVAFLFCILWSLLFHFKETTATHCGVPNYLPSVSSAIGGE
VPQRYVWRFCIGLHSAPRFLVAFAYWNHYLSCTSPCSCYRPLCRLNFGLNVVENLALLVLTYVSSSEDFT
IHENAFIVFIASSLGHMLLTCILWRLTKKHTVSQEDRKSYSWKQRLFIINFISFFSALAVYFRHNMYCEA
GVYTIFAILEYTVVLTNMAFHMTAWWDFGNKELLITSQPEEKRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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