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Report for CCDS58113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58113.1 Public Homo sapiens 11 PGAP2 24 110 108 CCDS HistoryNCBI Gene:27315Re-query CCDS DB by CCDS ID:58113.1Re-query CCDS DB by GeneID:27315See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58113.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000493547.6 ENSP00000431851.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493547.6Link to Ensembl Protein Viewer:ENSP00000431851.1Re-query CCDS DB by Nucleotide ID:ENST00000493547Re-query CCDS DB by Protein ID:ENSP00000431851
Original member Current member NCBI NM_001256238.1 NP_001243167.1 Accepted alive Link to Nucleotide Sequence:NM_001256238.1Link to Protein Sequence:NP_001243167.1Re-query CCDS DB by Nucleotide ID:NM_001256238Re-query CCDS DB by Protein ID:NP_001243167Link to BLAST:NP_001243167.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243167.1 232 Q9UHJ9-4 232 100% 0 0

Chromosomal Locations for CCDS 58113.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3811260 3811424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3823883 3824135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3824270 3824449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3825020 3825120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGTACCAGGTCCCACTACCACTGGATCGGGATGGGACCCTGGTACGGCTCCGCTTCACCATGGTGGCCC
TGGTCACGGTCTGCTGTCCACTTGTCGCCTTCCTCTTCTGCATCCTCTGGTCCCTGCTCTTCCACTTCAA
GGAGACAACGGCCACACACTGTGGGGTGCCCAATTACCTGCCCTCGGTGAGCTCAGCCATCGGCGGGGAG
GTGCCCCAGCGCTACGTGTGGCGTTTCTGCATCGGCCTGCACTCGGCGCCTCGCTTCTTGGTGGCCTTCG
CCTACTGGAACCACTACCTCAGCTGCACCTCCCCGTGTTCCTGCTATCGCCCGCTCTGCCGCCTCAACTT
CGGCCTCAATGTCGTGGAGAACCTCGCGTTGCTAGTGCTCACTTATGTCTCCTCCTCCGAGGACTTCACC
ATCCACGAAAATGCTTTCATTGTGTTCATTGCCTCATCCCTCGGGCACATGCTCCTCACCTGCATTCTCT
GGCGGTTGACCAAGAAGCACACAGTAAGTCAGGAGGTACGGTCTATCCCTAGCGGGGGCTCCAAGGCAGC
CCAGAAGAAAATCAAGGACATCTGTCCTCAGGATTCGGGATCGCAAGTCCTACAGCTGGAAACAGCGGCT
CTTCATCATCAACTTCATCTCCTTCTTCTCGGCGCTGGCTGTCTACTTTCGGCACAACATGTATTGTGA

Translation (232 aa):
MYQVPLPLDRDGTLVRLRFTMVALVTVCCPLVAFLFCILWSLLFHFKETTATHCGVPNYLPSVSSAIGGE
VPQRYVWRFCIGLHSAPRFLVAFAYWNHYLSCTSPCSCYRPLCRLNFGLNVVENLALLVLTYVSSSEDFT
IHENAFIVFIASSLGHMLLTCILWRLTKKHTVSQEVRSIPSGGSKAAQKKIKDICPQDSGSQVLQLETAA
LHHQLHLLLLGAGCLLSAQHVL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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