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Report for CCDS58303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58303.1 Public Homo sapiens 14 SLC39A2 24 110 108 CCDS HistoryNCBI Gene:29986Re-query CCDS DB by CCDS ID:58303.1Re-query CCDS DB by GeneID:29986See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58303.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000554422.5 ENSP00000452568.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000554422.5Link to Ensembl Protein Viewer:ENSP00000452568.1Re-query CCDS DB by Nucleotide ID:ENST00000554422Re-query CCDS DB by Protein ID:ENSP00000452568
Original member Current member NCBI NM_001256588.2 NP_001243517.1 Accepted alive Link to Nucleotide Sequence:NM_001256588.2Link to Protein Sequence:NP_001243517.1Re-query CCDS DB by Nucleotide ID:NM_001256588Re-query CCDS DB by Protein ID:NP_001243517Link to BLAST:NP_001243517.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243517.1 85 Q9NP94-2 85 100% 0 0

Chromosomal Locations for CCDS 58303.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20999447 20999561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20999742 20999872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21000121 21000132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (258 nt):
ATGGAGCAACTACTAGGAATAAAACTTGGCTGCCTGTTTGCCCTGTTGGCTCTCACTCTGGGCTGTGGCC
TTACTCCCATCTGCTTCAAATGGTTCCAGATTGATGCAGCCAGAGGTCATCACCGGCTAGTCCTCAGACT
CCTGGGCTGTATTTCTGCTGGTGTTTTCCTGGGAGCAGGGTTCATGCATATGACTGCTGAAGCCCTGGAG
GAAATTGAATCACAGATTCAGAAGTTCATGGTGCAGATCAGCAAGTGA

Translation (85 aa):
MEQLLGIKLGCLFALLALTLGCGLTPICFKWFQIDAARGHHRLVLRLLGCISAGVFLGAGFMHMTAEALE
EIESQIQKFMVQISK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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