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Report for CCDS58376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58376.1 Public Homo sapiens 15 LRRC49 24 110 108 CCDS HistoryNCBI Gene:54839Re-query CCDS DB by CCDS ID:58376.1Re-query CCDS DB by GeneID:54839See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58376.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000560369.5 ENSP00000453273.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000560369.5Link to Ensembl Protein Viewer:ENSP00000453273.1Re-query CCDS DB by Nucleotide ID:ENST00000560369Re-query CCDS DB by Protein ID:ENSP00000453273
Original member Current member NCBI NM_001199017.3 NP_001185946.1 Accepted alive Link to Nucleotide Sequence:NM_001199017.3Link to Protein Sequence:NP_001185946.1Re-query CCDS DB by Nucleotide ID:NM_001199017Re-query CCDS DB by Protein ID:NP_001185946Link to BLAST:NP_001185946.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185946.1 691 Q8IUZ0-2 691 100% 0 0

Chromosomal Locations for CCDS 58376.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 70892895 70892942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70893584 70893655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70895849 70895936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70900922 70901024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70904552 70904755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70911532 70911598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70919050 70919193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70936761 70936822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70963785 70963932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70980101 70980184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70984094 70984257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71008379 71008616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71009807 71009992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71012804 71012913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71037179 71037332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71049409 71049612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2076 nt):
ATGATTCCCGGGAAATATCGCTCTGTTTCTGGCCGGGCTGCGAACAACGTGAACTGCGGGCTTCATCTGG
TTATTCAAACATCATCGCTTCCTGAAAAAAACAAAGTAAGATTTAAGAAGGTTGAATTCAAGCTAAATAA
AGACACATCGTCATTCCCCGGTAGACTTTTACAACATGACCTTGAAAGAAACTACTCAAGTAGGCAAGGT
GATCATATTAATTTGGTGAGCTCATCATTGTCATCATTTCCTATTCTTCAACGTTCTTCTGAAGAGAAAA
TTCTTTACTCAGACAGGTTGAGCCTAGAAAGACAAAAGCTGACCGTATGTCCTATCATCAATGGGGAAGA
CCACCTTCGTTTGTTGAACTTTCAACACAATTTTATAACTCGGATACAAAATATTTCTAATCTACAGAAG
TTAATATCGTTGGATTTATATGATAACCAGATTGAAGAAATTAGTGGGCTTTCGACTCTGAGATGTCTTC
GTGTCCTTCTGTTGGGGAAAAACAGAATCAAGAAAATCTCAAATCTGGAGAATCTAAAAAGCTTAGATGT
CTTGGATCTTCATGGAAATCAGATTACCAAAATTGAAAATATTAATCATTTGTGTGAGTTGAGAGTTTTA
AATCTTGCCAGGAACTTTTTAAGTCATGTTGATAATCTTAATGGGCTGGATTCACTAACTGAACTTAACT
TGCGACACAATCAAATCACTTTCGTGAGAGATGTGGATAATTTGCCCTGCCTCCAACATCTCTTTCTCAG
CTTTAACAATATATCTAGTTTTGACAGTGTTTCCTGCCTTGCTGACTCTTCTTCCCTCTCGGACATCACC
TTTGATGGCAATCCCATAGCTCAAGAGTCATGGTACAAACACACTGTCCTTCAGAATATGATGCAGCTGC
GCCAGCTAGATATGAAGAGAATCACGGAAGAAGAAAGGCGTATGGCATCTGTTTTAGCCAAAAAAGAGGA
AGAGAAGAAGCGGGAAAGTCATAAACAATCTTTGCTTAAGGAGAAGAAAAGGTTAACAATTAACAACGTA
GCTCGACAGTGGGACTTGCAACAACAACGAGTAGCCAATATTGCTACAAATGAAGATAGAAAAGATTCTG
ACTCTCCTCAGGACCCCTGTCAGATTGATGGAAGCACCCTCTCTGCATTCCCAGAGGAAACAGGGCCTCT
AGACTCAGGACTCAACAATGCTTTACAAGGTTTATCTGTCATAGACACATACCTTGTTGAAGTGGACGGG
GATACACTTTCCCTATATGGCTCAGGAGCACTGGAATCTCTGGATAGGAATTGGAGTGTTCAAACAGCAG
GAATGATCACAACAGTCTCCTTCACTTTCATAGAATTTGATGAAATCGTCCAAGTGCTTCCTAAACTGAA
GATTAAGTTTCCTAATTCTCTGCACCTTAAATTCAAGGAAACAAATCTTGTAATGCTGCAGCAATTTAAC
GCACTAGCCCAACTCCGTCGTATTGACCAGTTGACAATTGATCCTCAAGGAAATCCAGTTGTCAATTTTA
CACTCTGGAAATACTATGTACTGTTTAGGCTAAGCCATTTCAGTATGCAGAAAATAAATGGAACAGAGGT
GACACAGAATGATATGATAATGGCTGAAAGGCTCTTTGGAATCCTAGCACATGTAGCATCTTCTGAGTTA
CCCCAGTATCGTCTGATTTCCATTCTGGGTGATGCCAGGAAAAAGCAATTTCGGTATCTACTAGAATCCA
AAGGAAAAAAACCTGGTATTATCAACGAAGAAAATAATGACAGCAAAAGACTTGTAGGAGAAAACACAAA
TCGTGCTACATTAAATTATACTACAAGAGACTTTTATAATGAAAAGCTAGAGGAAATAAAGGAAAAGAAG
AAATTCTGTAAAACATATATAGAAGACCTTGTGAAGGAAGCCACAGAAATCAACATGAAAAATGAGGCTT
TGCAGAAGCTTTGGCCACAGATGTTCATTGAGCTTGTTAGGGATGCAGTCATAGAAATTCGCAATAAAAA
TTCCTATATGAAGCTCTGCCTACAGCAGATAACAGACCAAAAATAA

Translation (691 aa):
MIPGKYRSVSGRAANNVNCGLHLVIQTSSLPEKNKVRFKKVEFKLNKDTSSFPGRLLQHDLERNYSSRQG
DHINLVSSSLSSFPILQRSSEEKILYSDRLSLERQKLTVCPIINGEDHLRLLNFQHNFITRIQNISNLQK
LISLDLYDNQIEEISGLSTLRCLRVLLLGKNRIKKISNLENLKSLDVLDLHGNQITKIENINHLCELRVL
NLARNFLSHVDNLNGLDSLTELNLRHNQITFVRDVDNLPCLQHLFLSFNNISSFDSVSCLADSSSLSDIT
FDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERRMASVLAKKEEEKKRESHKQSLLKEKKRLTINNV
ARQWDLQQQRVANIATNEDRKDSDSPQDPCQIDGSTLSAFPEETGPLDSGLNNALQGLSVIDTYLVEVDG
DTLSLYGSGALESLDRNWSVQTAGMITTVSFTFIEFDEIVQVLPKLKIKFPNSLHLKFKETNLVMLQQFN
ALAQLRRIDQLTIDPQGNPVVNFTLWKYYVLFRLSHFSMQKINGTEVTQNDMIMAERLFGILAHVASSEL
PQYRLISILGDARKKQFRYLLESKGKKPGIINEENNDSKRLVGENTNRATLNYTTRDFYNEKLEEIKEKK
KFCKTYIEDLVKEATEINMKNEALQKLWPQMFIELVRDAVIEIRNKNSYMKLCLQQITDQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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