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Report for CCDS58534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58534.1 Public Homo sapiens 17 IFT20 24 110 108 CCDS HistoryNCBI Gene:90410Re-query CCDS DB by CCDS ID:58534.1Re-query CCDS DB by GeneID:90410See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58534.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395418.8 ENSP00000378809.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395418.8Link to Ensembl Protein Viewer:ENSP00000378809.3Re-query CCDS DB by Nucleotide ID:ENST00000395418Re-query CCDS DB by Protein ID:ENSP00000378809
Original member Current member EBI ENST00000585313.5 ENSP00000463138.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000585313.5Link to Ensembl Protein Viewer:ENSP00000463138.1Re-query CCDS DB by Nucleotide ID:ENST00000585313Re-query CCDS DB by Protein ID:ENSP00000463138
Original member Current member NCBI NM_001267775.2 NP_001254704.1 Accepted alive Link to Nucleotide Sequence:NM_001267775.2Link to Protein Sequence:NP_001254704.1Re-query CCDS DB by Nucleotide ID:NM_001267775Re-query CCDS DB by Protein ID:NP_001254704Link to BLAST:NP_001254704.1
Original member Current member NCBI NM_001267776.2 NP_001254705.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001267776.2Link to Protein Sequence:NP_001254705.1Re-query CCDS DB by Nucleotide ID:NM_001267776Re-query CCDS DB by Protein ID:NP_001254705Link to BLAST:NP_001254705.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254704.1 132 Q8IY31-1 132 100% 0 0
NP_001254705.1 132 Q8IY31-1 132 100% 0 0

Chromosomal Locations for CCDS 58534.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28328652 28328733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28329173 28329276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28330443 28330528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28331859 28331985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGGCCAAGGACATCCTGGGTGAAGCAGGGCTACACTTTGATGAACTGAACAAGCTGAGGGTGTTGGACC
CAGAGGTTACCCAGCAGACCATAGAGCTGAAGGAAGAGTGCAAAGACTTTGTGGACAAAATTGGCCAGTT
TCAGAAAATAGTTGGTGGTTTAATTGAGCTTGTTGATCAACTTGCAAAAGAAGCAGAAAATGAAAAGATG
AAGGCCATCGGTGCTCGGAACTTGCTCAAATCTATAGCAAAGCAGAGAGAAGCTCAACAGCAGCAACTTC
AAGCCCTAATAGCAGAAAAGAAAATGCAGCTAGAAAGGTATCGGGTTGAATATGAAGCTTTGTGTAAAGT
AGAAGCAGAACAAAATGAATTTATTGACCAATTTATTTTTCAGAAATGA

Translation (132 aa):
MAKDILGEAGLHFDELNKLRVLDPEVTQQTIELKEECKDFVDKIGQFQKIVGGLIELVDQLAKEAENEKM
KAIGARNLLKSIAKQREAQQQQLQALIAEKKMQLERYRVEYEALCKVEAEQNEFIDQFIFQK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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