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Report for CCDS58608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58608.1 Public Homo sapiens 17 TSPAN10 24 110 108 CCDS HistoryNCBI Gene:83882Re-query CCDS DB by CCDS ID:58608.1Re-query CCDS DB by GeneID:83882See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 58608.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611590.2 ENSP00000484664.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000611590.2Link to Ensembl Protein Viewer:ENSP00000484664.1Re-query CCDS DB by Nucleotide ID:ENST00000611590Re-query CCDS DB by Protein ID:ENSP00000484664
Original member Current member EBI ENST00000696048.1 ENSP00000512352.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696048.1Link to Ensembl Protein Viewer:ENSP00000512352.1Re-query CCDS DB by Nucleotide ID:ENST00000696048Re-query CCDS DB by Protein ID:ENSP00000512352
Original member Current member NCBI NM_001290212.2 NP_001277141.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001290212.2Link to Protein Sequence:NP_001277141.2Re-query CCDS DB by Nucleotide ID:NM_001290212Re-query CCDS DB by Protein ID:NP_001277141Link to BLAST:NP_001277141.2
Original member Current member NCBI NM_031945.5 NP_114151.3 Accepted alive Link to Nucleotide Sequence:NM_031945.5Link to Protein Sequence:NP_114151.3Re-query CCDS DB by Nucleotide ID:NM_031945Re-query CCDS DB by Protein ID:NP_114151Link to BLAST:NP_114151.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277141.2 355 Q9H1Z9 355 98.5916% 0 5
NP_114151.3 355 Q9H1Z9 355 98.5916% 0 5

Chromosomal Locations for CCDS 58608.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 81642413 81642448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81644992 81645629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81647901 81648294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGAGGAGGGGGAGAGGAGCCCCTTACTGTCCCAGGAAACTGCAGGCCAGAAGCCCCTCTCTGTGCACA
GGCCACCCACCTCAGGCTGCCTAGGTCCAGTGCCCAGGGAGGACCAGGCGGAGGCCTGGGGCTGCAGCTG
CTGTCCCCCGGAGACCAAGCACCAGGCCTTGAGTGGCACCCCCAAGAAAGGACCAGCCCCTTCCCTCTCC
CCAGGGAGCAGCTGCGTCAAGTATCTGATCTTCCTCTCCAACTTCCCCTTCTCCCTGCTGGGGCTGCTGG
CCCTGGCCATCGGGCTCTGGGGCCTGGCTGTCAAGGGGTCTCTGGGAAGTGATCTGGGGGGGCCCCTGCC
CGCAGACCCCATGCTGGGGCTGGCACTGGGAGGGCTGGTGGTCAGCGCAGTGAGCCTGGCTGGCTACCTG
GGCGCCCTCTGTGAGAACACCTGCCTGTTACGTGGCTTCTCTGGGGGCATCCTTGCCTTCCTGGTGCTTG
AGGCCGTGGCGGGGGCCCTGGTGGTGGCCCTCTGGGGCCCGCTGCAAGACAGCCTGGAGCACACCCTGCG
TGTGGCCATCGCCCACTACCAGGACGACCCAGACCTGCGCTTCCTCCTCGACCAAGTCCAGCTCGGGCTG
AGGTGCTGCGGAGCTGCCTCCTACCAGGACTGGCAGCAGAACCTGTACTTTAACTGCAGCTCCCCCGGGG
TGCAGGCCTGCAGCCTTCCCGCCTCCTGCTGCATCGACCCCCGCGAAGATGGAGCCTCTGTCAACGACCA
GTGCGGCTTCGGGGTCCTGCGCCTGGATGCGGACGCAGCTCAGAGAGTGGTGTACCTGGAGGGCTGCGGC
CCGCCGCTCCGGCGGTGGCTGCGCGCGAACCTGGCTGCCTCGGGCGGCTACGCAATCGCGGTGGTGCTGC
TGCAGGGCGCGGAGCTCCTGCTGGCCGCCCGGCTACTCGGGGCCCTCGCTGCCCGCAGGGGGGCGGCGTA
CGGCCCCGGAGCGCGCGGGGAGGACCGCGCTGGCCCCCAGAGCCCCAGCCCCGGCGCCCCGCCCGCTGCC
AAGCCCGCCCGGGGCTGA

Translation (355 aa):
MEEGERSPLLSQETAGQKPLSVHRPPTSGCLGPVPREDQAEAWGCSCCPPETKHQALSGTPKKGPAPSLS
PGSSCVKYLIFLSNFPFSLLGLLALAIGLWGLAVKGSLGSDLGGPLPADPMLGLALGGLVVSAVSLAGYL
GALCENTCLLRGFSGGILAFLVLEAVAGALVVALWGPLQDSLEHTLRVAIAHYQDDPDLRFLLDQVQLGL
RCCGAASYQDWQQNLYFNCSSPGVQACSLPASCCIDPREDGASVNDQCGFGVLRLDADAAQRVVYLEGCG
PPLRRWLRANLAASGGYAIAVVLLQGAELLLAARLLGALAARRGAAYGPGARGEDRAGPQSPSPGAPPAA
KPARG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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