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Report for CCDS58672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58672.1 Public Homo sapiens 19 GFY 24 110 108 CCDS HistoryNCBI Gene:100507003Re-query CCDS DB by CCDS ID:58672.1Re-query CCDS DB by GeneID:100507003See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58672.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000576655.5 ENSP00000459439.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000576655.5Link to Ensembl Protein Viewer:ENSP00000459439.1Re-query CCDS DB by Nucleotide ID:ENST00000576655Re-query CCDS DB by Protein ID:ENSP00000459439
Original member Current member EBI ENST00000610896.3 ENSP00000478493.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000610896.3Link to Ensembl Protein Viewer:ENSP00000478493.1Re-query CCDS DB by Nucleotide ID:ENST00000610896Re-query CCDS DB by Protein ID:ENSP00000478493
Original member Current member NCBI NM_001195256.2 NP_001182185.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195256.2Link to Protein Sequence:NP_001182185.1Re-query CCDS DB by Nucleotide ID:NM_001195256Re-query CCDS DB by Protein ID:NP_001182185Link to BLAST:NP_001182185.1
Original member Current member NCBI NM_001385187.1 NP_001372116.1 Accepted alive Link to Nucleotide Sequence:NM_001385187.1Link to Protein Sequence:NP_001372116.1Re-query CCDS DB by Nucleotide ID:NM_001385187Re-query CCDS DB by Protein ID:NP_001372116Link to BLAST:NP_001372116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182185.1 518 I3L273 518 100% 0 0
NP_001372116.1 518 I3L273 518 100% 0 0

Chromosomal Locations for CCDS 58672.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49426431 49427613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49427946 49428119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49428619 49428818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGAAATCATTCAGCCGGATCCTCTTCCTCGTCTTCCTCCTCGCCGGCCTGAGGTCCAAGGCCGCTCCCT
CAGCCCCTCTGCCTTTGGGCTGTGGCTTTCCGGACATGGCCCACCCCTCTGAGACTTCCCCTCTGAAGGG
TGCTTCTGAAAATTCCAAACGAGATCGCCTTAACCCAGAATTTCCTGGGACTCCTTACCCTGAGCCTTCC
AAGCTACCTCATACGGTTTCCCTGGAAACCTTCCCACTTGACTTCACTGAGCCCCTCAACCCTGACCTCC
GAGAAACCCCGCACCCAGAGTCTCCTGAGACCCCCAAAGCTGACTCACTCACAACCTCAATATCAGAATC
CCTGGACATGCCCAAAACTAACCTCTCCAAAATGGCACACCCAGAGTCTTCTGAGACCCCCACACCTGGC
CCAACTGAAATGCCACACCCAGGATCCCCTGAGACCCCCAAACCTAACTTCTCCAAAACTTCACGCCCAG
AATTTCCTGAGACCCCAAACACTGACCTTATGCAAACTACACCCCAAGAATCCCCAGAGATTCTGCAGCT
TAATGCCACTGAAGTCTCACAGGCAGAACTCCCCGAGACCTCAAACACTAACCCTACCAAGACCCCTGAC
CCCAAATCCCCAGAAAAGCATGACCTCAACTCCACTGAGACCCCAAACTCTGAATTTCTCCAAGCTCTCC
ATCCTGACCCTTCTAAAACCCCCCACCCAGAATCCCATGTGACCCACAATCCCAGCCCCACCGAAATTTC
CCAAACAGAATTCCCCACAACCTACTACCAAAATGCAACAGATGTACCCAGGACCTCCGACCCTCAAATC
TCCACTAGTCTCTACCCAGAAACACCTGTGCCCTTCAAGGATGACGCCACTGCTCTAAATGAGCTGTCCC
TGAATCCCAAACCAGGAACACCTGCAGCCATCCAGCCCGACTCCCCAAAATTGCCCACTTCAGATTCTCC
AGGAATGGTTGAGCTGAAGGCCCCCCAGAACTCTGGCCCTAAGGAGTCCAACGTCCCTCCTCCCTCAGCC
CGGATTGCAGGTCCCCCTGCTCTTCCAGGGCGCCCCAGTCAGTTGGCCCCTGCCACTCTGCGGGCACCCC
AGAGGCACAGCCGAGGTGAGGGAGTCAACACCATCATCGTGGTGGAGCGAGTGAAGGAGACCGGCGTGAC
TCTGGTGGGGCGACCACGTGGCGCAGCAGGCGGGGCCCTCTGCCTGTTCTTCGCGGGGACCGCGCTGCTG
ATCGGCATCTTTGTGCTGCTGTGGTGTCTTTACCGCCGGGCAGCTAGACAGCGGCCCTTCGCACATCACC
GGCTTCCGGACGACGGAGATGAACCGGTTCTGCATTTGGACGCCCCGAAAGACCCCTACGACCTCTACTT
TTATGCTCCGGATACCTGGGTCCCTTCCCACATCGCCACCAAGCAGCCCCCGCCCACACCTCCTCTGCCA
CCAAAGCTGCCCCCGCCGCCCCGCGGGGGTCGCCCGCAGCGTCTGGAGGCCCTGTCCCCCGCCACGCTCC
CCAACAACTTCGTGTGA

Translation (518 aa):
MKSFSRILFLVFLLAGLRSKAAPSAPLPLGCGFPDMAHPSETSPLKGASENSKRDRLNPEFPGTPYPEPS
KLPHTVSLETFPLDFTEPLNPDLRETPHPESPETPKADSLTTSISESLDMPKTNLSKMAHPESSETPTPG
PTEMPHPGSPETPKPNFSKTSRPEFPETPNTDLMQTTPQESPEILQLNATEVSQAELPETSNTNPTKTPD
PKSPEKHDLNSTETPNSEFLQALHPDPSKTPHPESHVTHNPSPTEISQTEFPTTYYQNATDVPRTSDPQI
STSLYPETPVPFKDDATALNELSLNPKPGTPAAIQPDSPKLPTSDSPGMVELKAPQNSGPKESNVPPPSA
RIAGPPALPGRPSQLAPATLRAPQRHSRGEGVNTIIVVERVKETGVTLVGRPRGAAGGALCLFFAGTALL
IGIFVLLWCLYRRAARQRPFAHHRLPDDGDEPVLHLDAPKDPYDLYFYAPDTWVPSHIATKQPPPTPPLP
PKLPPPPRGGRPQRLEALSPATLPNNFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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