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Report for CCDS58838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58838.1 Public Homo sapiens 3 FOXP1 24 110 108 CCDS HistoryNCBI Gene:27086Re-query CCDS DB by CCDS ID:58838.1Re-query CCDS DB by GeneID:27086See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58838.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000484350.5 ENSP00000417857.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000484350.5Link to Ensembl Protein Viewer:ENSP00000417857.1Re-query CCDS DB by Nucleotide ID:ENST00000484350Re-query CCDS DB by Protein ID:ENSP00000417857
Original member Current member NCBI NM_001244812.3 NP_001231741.1 Accepted alive Link to Nucleotide Sequence:NM_001244812.3Link to Protein Sequence:NP_001231741.1Re-query CCDS DB by Nucleotide ID:NM_001244812Re-query CCDS DB by Protein ID:NP_001231741Link to BLAST:NP_001231741.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231741.1 601 Q9H334-6 601 100% 0 0

Chromosomal Locations for CCDS 58838.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 70959247 70959391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70965890 70966056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70970736 70970805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70972555 70972676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70976941 70977042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70977643 70977722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70977828 70978029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70987994 70988077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71000972 71001059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71015549 71015653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71041328 71041532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71046942 71047095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71112536 71112637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71198202 71198381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGATGCAAGAATCTGGGACTGAGACAAAAAGTAACGGTTCAGCCATCCAGAATGGGTCGGGCGGCAGCA
ACCACTTACTAGAGTGCGGCGGTCTTCGGGAGGGGCGGTCCAACGGAGAGACGCCGGCCGTGGACATCGG
GGCAGCTGACCTCGCCCACGCCCAGCAGCAGCAGCAACAGGCACTTCAGGTGGCAAGACAGCTCCTTCTT
CAGCAGCAACAGCAGCAGCAAGTTAGTGGATTAAAATCTCCCAAGAGGAATGACAAACAACCAGCTCTTC
AGCAACAGCAGGTGGCTACCCAGCAGTTGGCTTTTCAGCAGCAGCTTTTACAGATGCAGCAGTTACAGCA
GCAGCACCTCCTGTCTTTGCAGCGCCAAGGCCTTCTGACAATTCAGCCCGGGCAGCCTGCCCTTCCCCTT
CAACCTCTTGCTCAAGGCATGATTCCAACAGAACTGCAGCAGCTCTGGAAAGAAGTGACAAGTGCTCATA
CTGCAGAAGAAACCACAGGCAACAATCACAGCAGTTTGGATCTGACCACGACATGTGTCTCCTCCTCTGC
ACCTTCCAAGACCTCCTTAATAATGAACCCACATGCCTCTACCAATGGACAGCTCTCAGTCCACACTCCC
AAAAGGGAAAGTTTGTCCCATGAGGAGCACCCCCATAGCCATCCTCTCTATGGACATGGTGTATGCAAGT
GGCCAGGCTGTGAAGCAGTGTGCGAAGATTTCCAATCATTTCTAAAACATCTCAACAGTGAGCATGCGCT
GGACGATAGAAGTACAGCCCAATGTAGAGTACAAATGCAGGTTGTACAGCAGTTAGAGCTACAGCTTGCA
AAAGACAAAGAACGCCTGCAAGCCATGATGACCCACCTGCATGTGAAGTCTACAGAACCCAAAGCCGCCC
CTCAGCCCTTGAATCTGGTATCAAGTGTCACTCTCTCCAAGTCCGCATCGGAGGCTTCTCCACAGAGCTT
ACCTCATACTCCAACGACCCCAACCGCCCCCCTGACTCCCGTCACCCAAGGCCCCTCTGTCATCACAACC
ACCAGCATGCACACGGTGGGACCCATCCGCAGGCGGTACTCAGACAAATACAACGTGCCCATTTCGTCAG
CAGATATTGCGCAGAACCAAGAATTTTATAAGAACGCAGAAGTTAGACCACCATTTACATATGCATCTTT
AATTAGGCAGGCCATTCTCGAATCTCCAGAAAAGCAGCTAACACTAAATGAGATCTATAACTGGTTCACA
CGAATGTTTGCTTACTTCCGACGCAACGCGGCCACGTGGAAGAATGCAGTGCGTCATAATCTTAGTCTTC
ACAAGTGTTTTGTGCGAGTAGAAAACGTTAAAGGGGCAGTATGGACAGTGGATGAAGTAGAATTCCAAAA
ACGAAGGCCACAAAAGATCAGTGGTAACCCTTCCCTTATTAAAAACATGCAGAGCAGCCACGCCTACTGC
ACACCTCTCAATGCAGCTTTACAGGCTTCAATGGCTGAGAATAGTATACCTCTATACACTACCGCTTCCA
TGGGAAATCCCACTCTGGGCAACTTAGCCAGCGCAATACGGGAAGAGCTGAACGGGGCAATGGAGCATAC
CAACAGCAACGAGAGTGACAGCAGTCCAGGCAGATCTCCTATGCAAGCCGTGCATCCTGTACACGTCAAA
GAAGAGCCCCTCGATCCAGAGGAAGCTGAAGGGCCCCTGTCCTTAGTGACAACAGCCAACCACAGTCCAG
ATTTTGACCATGACAGAGATTACGAAGATGAACCAGTAAACGAGGACATGGAGTGA

Translation (601 aa):
MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQALQVARQLLL
QQQQQQQVSGLKSPKRNDKQPALQQQQVATQQLAFQQQLLQMQQLQQQHLLSLQRQGLLTIQPGQPALPL
QPLAQGMIPTELQQLWKEVTSAHTAEETTGNNHSSLDLTTTCVSSSAPSKTSLIMNPHASTNGQLSVHTP
KRESLSHEEHPHSHPLYGHGVCKWPGCEAVCEDFQSFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLA
KDKERLQAMMTHLHVKSTEPKAAPQPLNLVSSVTLSKSASEASPQSLPHTPTTPTAPLTPVTQGPSVITT
TSMHTVGPIRRRYSDKYNVPISSADIAQNQEFYKNAEVRPPFTYASLIRQAILESPEKQLTLNEIYNWFT
RMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEFQKRRPQKISGNPSLIKNMQSSHAYC
TPLNAALQASMAENSIPLYTTASMGNPTLGNLASAIREELNGAMEHTNSNESDSSPGRSPMQAVHPVHVK
EEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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