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Report for CCDS58841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58841.1 Public Homo sapiens 3 ALCAM 24 110 108 CCDS HistoryNCBI Gene:214Re-query CCDS DB by CCDS ID:58841.1Re-query CCDS DB by GeneID:214See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58841.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000472644.6 ENSP00000419236.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000472644.6Link to Ensembl Protein Viewer:ENSP00000419236.2Re-query CCDS DB by Nucleotide ID:ENST00000472644Re-query CCDS DB by Protein ID:ENSP00000419236
Original member Current member NCBI NM_001243280.2 NP_001230209.1 Accepted alive Link to Nucleotide Sequence:NM_001243280.2Link to Protein Sequence:NP_001230209.1Re-query CCDS DB by Nucleotide ID:NM_001243280Re-query CCDS DB by Protein ID:NP_001230209Link to BLAST:NP_001230209.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230209.1 570 Q13740-2 570 100% 0 0

Chromosomal Locations for CCDS 58841.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 105367409 105367481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105520067 105520167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105524289 105524508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105532002 105532066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105533603 105533690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105534663 105534845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105539975 105540102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105541633 105541765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105545223 105545335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105547149 105547284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105547390 105547523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105550127 105550259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105552468 105552585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105571852 105571939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGC
CAGGCCTTGGATGGTATACTGTAAATTCAGCATATGGAGATACCATTATCATACCTTGCCGACTTGACGT
ACCTCAGAATCTCATGTTTGGCAAATGGAAATATGAAAAGCCCGATGGCTCCCCAGTATTTATTGCCTTC
AGATCCTCTACAAAGAAAAGTGTGCAGTACGACGATGTACCAGAATACAAAGACAGATTGAACCTCTCAG
AAAACTACACTTTGTCTATCAGTAATGCAAGGATCAGTGATGAAAAGAGATTTGTGTGCATGCTAGTAAC
TGAGGACAACGTGTTTGAGGCACCTACAATAGTCAAGGTGTTCAAGCAACCATCTAAACCTGAAATTGTA
AGCAAAGCACTGTTTCTCGAAACAGAGCAGCTAAAAAAGTTGGGTGACTGCATTTCAGAAGACAGTTATC
CAGATGGCAATATCACATGGTACAGGAATGGAAAAGTGCTACATCCCCTTGAAGGAGCGGTGGTCATAAT
TTTTAAAAAGGAAATGGACCCAGTGACTCAGCTCTATACCATGACTTCCACCCTGGAGTACAAGACAACC
AAGGCTGACATACAAATGCCATTCACCTGCTCGGTGACATATTATGGACCATCTGGCCAGAAAACAATTC
ATTCTGAACAGGCAGTATTTGATATTTACTATCCTACAGAGCAGGTGACAATACAAGTGCTGCCACCAAA
AAATGCCATCAAAGAAGGGGATAACATCACTCTTAAATGCTTAGGGAATGGCAACCCTCCCCCAGAGGAA
TTTTTGTTTTACTTACCAGGACAGCCCGAAGGAATAAGAAGCTCAAATACTTACACACTGACGGATGTGA
GGCGCAATGCAACAGGAGACTACAAGTGTTCCCTGATAGACAAAAAAAGCATGATTGCTTCAACAGCTAT
CACAGTTCACTATTTGGATTTGTCCTTAAACCCAAGTGGAGAAGTGACTAGACAGATTGGTGATGCCCTA
CCCGTGTCATGCACAATATCTGCTAGCAGGAATGCAACTGTGGTATGGATGAAAGATAACATCAGGCTTC
GATCTAGCCCGTCATTTTCTAGTCTTCATTATCAGGATGCTGGAAACTATGTCTGCGAAACTGCTCTGCA
GGAGGTTGAAGGACTAAAGAAAAGAGAGTCATTGACTCTCATTGTAGAAGGCAAACCTCAAATAAAAATG
ACAAAGAAAACTGATCCCAGTGGACTATCTAAAACAATAATCTGCCATGTGGAAGGTTTTCCAAAGCCAG
CCATTCAATGGACAATTACTGGCAGTGGAAGCGTCATAAACCAAACAGAGGAATCTCCTTATATTAATGG
CAGGTATTATAGTAAAATTATCATTTCCCCTGAAGAGAATGTTACATTAACTTGCACAGCAGAAAACCAA
CTGGAGAGAACAGTAAACTCCTTGAATGTCTCTGCTAATGAAAACAGAGAAAAGGTGAATGACCAGGCAA
AACTAATTGTGGGAATCGTTGTTGGTCTCCTCCTTGCTGCCCTTGTTGCTGGTGTCGTCTACTGGCTGTA
CATGAAGAAGTCAAAGACTGCATCAAAACATGTAAACAAGGACCTCGGTAATATGGAAGAAAACAAAAAG
TTAGAAGAAAACAATCACAAAACTGAAGCCTAA

Translation (570 aa):
MESKGASSCRLLFCLLISATVFRPGLGWYTVNSAYGDTIIIPCRLDVPQNLMFGKWKYEKPDGSPVFIAF
RSSTKKSVQYDDVPEYKDRLNLSENYTLSISNARISDEKRFVCMLVTEDNVFEAPTIVKVFKQPSKPEIV
SKALFLETEQLKKLGDCISEDSYPDGNITWYRNGKVLHPLEGAVVIIFKKEMDPVTQLYTMTSTLEYKTT
KADIQMPFTCSVTYYGPSGQKTIHSEQAVFDIYYPTEQVTIQVLPPKNAIKEGDNITLKCLGNGNPPPEE
FLFYLPGQPEGIRSSNTYTLTDVRRNATGDYKCSLIDKKSMIASTAITVHYLDLSLNPSGEVTRQIGDAL
PVSCTISASRNATVVWMKDNIRLRSSPSFSSLHYQDAGNYVCETALQEVEGLKKRESLTLIVEGKPQIKM
TKKTDPSGLSKTIICHVEGFPKPAIQWTITGSGSVINQTEESPYINGRYYSKIIISPEENVTLTCTAENQ
LERTVNSLNVSANENREKVNDQAKLIVGIVVGLLLAALVAGVVYWLYMKKSKTASKHVNKDLGNMEENKK
LEENNHKTEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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