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Report for CCDS58914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58914.1 Public Homo sapiens 4 SMARCAD1 24 110 108 CCDS HistoryNCBI Gene:56916Re-query CCDS DB by CCDS ID:58914.1Re-query CCDS DB by GeneID:56916See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58914.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509418.1 ENSP00000423286.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509418.1Link to Ensembl Protein Viewer:ENSP00000423286.1Re-query CCDS DB by Nucleotide ID:ENST00000509418Re-query CCDS DB by Protein ID:ENSP00000423286
Original member Current member NCBI NM_001254949.2 NP_001241878.1 Accepted alive Link to Nucleotide Sequence:NM_001254949.2Link to Protein Sequence:NP_001241878.1Re-query CCDS DB by Nucleotide ID:NM_001254949Re-query CCDS DB by Protein ID:NP_001241878Link to BLAST:NP_001241878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001241878.1 596 Q9H4L7-3 596 100% 0 0

Chromosomal Locations for CCDS 58914.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 94264716 94264906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94270728 94270818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94273617 94273716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94274738 94274797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94274890 94274965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94276339 94276474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94277022 94277159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94278422 94278517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94278616 94278733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94278929 94279050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94280592 94280780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94281472 94281590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94283121 94283303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94284960 94285069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94289473 94289534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGTCCAAAACTAATGGCTTATCAGAAGATTTGATATGGCACTGTAAAACACTGATCCAAGAAAGAGATG
TAGTTATAAGGCTTATGAACAAATGTGAAGACATTTCAAATAAATTGACCAAACAAGTTACCATGCTTAC
TGGAAATGGAGGTGGATGGAACATAGAACAACCTTCCATTCTAAACCAAAGTTTGTCACTCAAGCCCTAT
CAGAAGGTTGGTTTGAATTGGCTGGCATTGGTACATAAACATGGACTTAATGGCATTTTGGCAGATGAAA
TGGGCCTAGGAAAAACTATTCAAGCCATTGCATTTCTGGCATACCTCTATCAGGAGGGTAATAATGGTCC
TCATTTGATCGTTGTTCCAGCTTCAACTATAGATAACTGGTTAAGGGAAGTTAATTTATGGTGCCCTACT
TTGAAGGTCCTCTGTTACTATGGTTCTCAAGAAGAACGTAAACAAATTAGATTTAACATTCATAGTAGAT
ATGAAGATTACAATGTAATTGTGACCACATATAACTGTGCGATCAGCAGTTCTGATGACCGTAGTCTGTT
TCGACGGCTGAAACTTAATTACGCAATTTTTGATGAGGGCCATATGCTGAAGAATATGGGCTCCATTCGC
TACCAGCACCTTATGACAATTAATGCAAATAACCGTTTGCTGCTCACAGGCACACCTGTACAGAACAATC
TGTTAGAACTCATGTCGCTGTTGAATTTTGTTATGCCACACATGTTTAGTAGTAGCACCAGTGAAATACG
AAGAATGTTTTCCTCTAAGACAAAATCAGCAGATGAGCAAAGCATATATGAAAAGGAGAGAATAGCACAT
GCAAAACAAATTATAAAGCCATTTATTCTCAGAAGAGTAAAAGAAGAGGTTCTCAAGCAGTTACCCCCCA
AGAAAGATCGAATTGAGTTGTGTGCAATGTCGGAGAAGCAGGAGCAACTCTATTTGGGTCTTTTCAACAG
ATTGAAAAAATCTATCAATAACTTGGAAAAAAACACAGAAATGTGCAATGTCATGATGCAGTTGAGGAAA
ATGGCCAATCATCCTTTATTACATCGCCAATATTACACAGCTGAAAAACTCAAGGAAATGTCTCAGCTTA
TGCTAAAGGAACCTACACATTGTGAGGCTAACCCTGACCTGATCTTTGAAGATATGGAAGTTATGACAGA
CTTCGAACTACATGTACTTTGTAAACAGTACCGACACATTAATAACTTTCAGTTAGACATGGACTTGATT
TTAGATTCTGGAAAATTTCGAGTTTTAGGATGCATCTTGTCTGAATTGAAACAGAAGGGTGATAGAGTTG
TGTTATTTAGCCAATTTACCATGATGCTGGATATCTTAGAGGTTCTATTAAAACATCATCAGCATAGGTA
CCTCAGATTAGATGGAAAGACTCAGATTTCTGAAAGGATTCATCTAATTGATGAGTTTAATACCGATATG
GATATCTTTGTGTTTCTGCTATCAACAAAAGCTGGTGGATTAGGAATAAATCTGACTTCAGCAAATGTTG
TTATACTTCACGATATTGACTGTAATCCTTATAATGACAAACAAGCAGAAGATAGATGCCATAGAGTAGG
CCAGACTAAAGAAGTACTAGTTATAAAACTAATAAGCCAAGGGACGATTGAAGAATCCATGCTAAAAATT
AACCAACAGAAATTGAAACTAGAACAGGATATGACTACAGTAGATGAAGGTGATGAAGGGAGTATGCCAG
CAGATATAGCCACATTACTAAAAACATCAATGGGCCTGTGA

Translation (596 aa):
MSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPY
QKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPT
LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIR
YQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAH
AKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRK
MANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLI
LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDM
DIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKI
NQQKLKLEQDMTTVDEGDEGSMPADIATLLKTSMGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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