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Report for CCDS58991.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58991.2 Public Homo sapiens 5 NOP16 24 110 108 CCDS HistoryNCBI Gene:51491Re-query CCDS DB by CCDS ID:58991.2Re-query CCDS DB by GeneID:51491See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 58991.1
The coding region has been updated to represent an alternative protein C-terminus as encoded by the GRCh38 reference genome assembly, and supported by the available transcript and conservation data.

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 58991.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621444.4 ENSP00000479445.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621444.4Link to Ensembl Protein Viewer:ENSP00000479445.1Re-query CCDS DB by Nucleotide ID:ENST00000621444Re-query CCDS DB by Protein ID:ENSP00000479445
Original member Current member NCBI NM_001256540.4 NP_001243469.2 Accepted alive Link to Nucleotide Sequence:NM_001256540.4Link to Protein Sequence:NP_001243469.2Re-query CCDS DB by Nucleotide ID:NM_001256540Re-query CCDS DB by Protein ID:NP_001243469Link to BLAST:NP_001243469.2

Chromosomal Locations for CCDS 58991.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176383981 176384283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176385221 176385327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176386840 176386909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176388235 176388343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176388433 176388539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGCCCAAGGCCAAGGGCAAAACCCGGAGGCAGAAGTTTGGTTACAGTGTCAACCGAAAGCGTCTGAACC
GGAATGCTCGACGGAAGGCAGCGCCGCGGATCGAATGCTCCCACATCCGACATGCCTGGGACCACGCTAA
ATCGGTACGGCAGAACCTGGCCGAGATGGGGTTGGCTGTGGACCCCAACAGGGCGGTGCCCCTCCGTAAG
AGAAAGGTGAAGGCCATGGAGGTGGACATAGAGGAGAGGCCTAAAGAGCTTGTACGGAAGCCCTATGTGC
TGAATGACCTGGAGGCAGAAGCCAGCCTTCCAGAAAAGAAAGGAAATACTCTGTCTCGGGACCTCATTGA
CTATGTACGCTACATGGTAGAGAACCACGGGGAGGACTATAAGAGTGGCAAGACTTCCTCGATTCTTTGC
AGAAGAGGAAGATGGAGGTGGAGTGACTGGTTTACATCACAGCTGCCCCAGGCTGAGGCGTCCCCCGGAC
CAGTGAAGCTGGAGCCAGGGTGTAAGGCAAGGAGGTGCTGTGTGGCTCCAGAGGAGCTGGCCAGGTCCCA
TGGAATCAGAAGGTTACACACACACGTGCACACTCCCCGCTCTGGGGAAGGAACTGTTCTCAGAGGCTCC
AATTTATATTCATCTGGGGGTTCACGGAAAAGCCAGAACCTGCTGTTTTCAGGGTGGGTGATGTAA

Translation (231 aa):
MPKAKGKTRRQKFGYSVNRKRLNRNARRKAAPRIECSHIRHAWDHAKSVRQNLAEMGLAVDPNRAVPLRK
RKVKAMEVDIEERPKELVRKPYVLNDLEAEASLPEKKGNTLSRDLIDYVRYMVENHGEDYKSGKTSSILC
RRGRWRWSDWFTSQLPQAEASPGPVKLEPGCKARRCCVAPEELARSHGIRRLHTHVHTPRSGEGTVLRGS
NLYSSGGSRKSQNLLFSGWVM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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