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Report for CCDS5917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5917.1 Public Homo sapiens 7 SLC4A2 24 110 108 CCDS HistoryNCBI Gene:6522Re-query CCDS DB by CCDS ID:5917.1Re-query CCDS DB by GeneID:6522See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5917.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413384.7 ENSP00000405600.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000413384.7Link to Ensembl Protein Viewer:ENSP00000405600.2Re-query CCDS DB by Nucleotide ID:ENST00000413384Re-query CCDS DB by Protein ID:ENSP00000405600
Original member Current member EBI ENST00000485713.5 ENSP00000419412.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000485713.5Link to Ensembl Protein Viewer:ENSP00000419412.1Re-query CCDS DB by Nucleotide ID:ENST00000485713Re-query CCDS DB by Protein ID:ENSP00000419412
Original member Current member NCBI NM_001199692.3 NP_001186621.1 Accepted alive Link to Nucleotide Sequence:NM_001199692.3Link to Protein Sequence:NP_001186621.1Re-query CCDS DB by Nucleotide ID:NM_001199692Re-query CCDS DB by Protein ID:NP_001186621Link to BLAST:NP_001186621.1
Original member Current member NCBI NM_003040.4 NP_003031.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003040.4Link to Protein Sequence:NP_003031.3Re-query CCDS DB by Nucleotide ID:NM_003040Re-query CCDS DB by Protein ID:NP_003031Link to BLAST:NP_003031.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186621.1 1241 P04920-1 1241 100% 0 0
NP_003031.3 1241 P04920-1 1241 100% 0 0

Chromosomal Locations for CCDS 5917.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151061988 151062038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151064202 151064367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151064526 151064767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151064848 151064966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151066517 151066761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151066851 151066993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151067874 151068054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151069947 151070082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151070181 151070346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151070457 151070571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151070727 151070911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151071072 151071297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151071390 151071605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151071689 151071837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151071942 151072136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151074039 151074293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151074399 151074488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151074675 151074841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151075255 151075508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151075606 151075775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151076013 151076186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151076287 151076367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3726 nt):
ATGAGCAGCGCCCCTCGGCGCCCCGCCAAGGGCGCAGATTCTTTCTGTACGCCAGAGCCAGAGAGCTTGG
GCCCTGGGACGCCTGGGTTCCCCGAGCAGGAGGAAGACGAACTTCACCGCACCCTGGGCGTGGAGCGGTT
TGAGGAGATCCTACAGGAGGCCGGGTCTCGTGGAGGGGAGGAGCCAGGCCGCAGCTATGGGGAGGAAGAC
TTTGAGTACCACCGCCAGTCCTCCCACCACATCCATCACCCACTGTCCACCCACCTGCCTCCGGATGCAC
GCCGCCGCAAGACACCCCAGGGCCCAGGACGGAAGCCTCGAAGGCGCCCGGGAGCCTCCCCGACTGGAGA
AACCCCGACCATTGAGGAGGGGGAGGAAGATGAGGATGAGGCCAGCGAGGCTGAGGGGGCCCGGGCTCTC
ACTCAGCCGTCCCCTGTCTCCACACCCTCCTCGGTGCAGTTCTTTCTCCAAGAGGATGACAGTGCTGACC
GGAAGGCAGAGAGGACCAGTCCATCTTCCCCTGCACCACTGCCCCACCAGGAGGCGACTCCTCGGGCCTC
CAAAGGGGCCCAGGCTGGAACCCAGGTGGAGGAGGCGGAGGCGGAGGCGGTGGCGGTGGCCAGTGGCACT
GCAGGGGGTGACGACGGGGGTGCCTCGGGGCGCCCCCTGCCCAAAGCCCAGCCTGGGCACCGCAGCTACA
ACCTTCAGGAGAGGAGGCGCATCGGGAGCATGACTGGGGCTGAGCAGGCACTGCTGCCCCGGGTCCCCAC
GGATGAGATTGAGGCCCAGACGCTGGCCACGGCCGACCTAGACCTCATGAAGAGTCACCGGTTTGAGGAC
GTTCCTGGGGTGCGGCGGCACTTGGTGCGGAAGAATGCCAAAGGTTCCACACAGAGTGGCCGAGAAGGGC
GGGAGCCTGGCCCCACACCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGTGTTTGTGGAGCT
GAATGAGTTGCTCCTGGACAAAAACCAGGAGCCCCAGTGGCGGGAGACAGCTCGCTGGATCAAATTTGAA
GAGGACGTGGAGGAGGAGACTGAGCGCTGGGGGAAGCCCCACGTGGCCTCCCTCTCCTTCCGCAGTCTCC
TGGAGCTCCGCAGGACCCTGGCCCATGGGGCTGTGCTCTTGGATCTGGACCAGCAGACCCTGCCCGGAGT
GGCCCACCAGGTGGTGGAGCAGATGGTCATCTCTGACCAGATCAAGGCCGAGGACAGGGCCAACGTGCTG
CGGGCTCTGCTGTTGAAACACAGCCACCCAAGTGATGAGAAGGACTTCTCCTTCCCCCGCAACATCTCAG
CTGGCTCCCTGGGCTCCCTGCTGGGGCATCACCATGGTCAGGGGGCTGAGAGTGACCCCCACGTCACCGA
GCCTCTCATGGGAGGTGTTCCTGAGACCCGGCTGGAGGTGGAGCGAGAGCGTGAGCTGCCGCCTCCAGCA
CCACCAGCTGGCATCACCCGCTCCAAGTCCAAGCACGAGCTGAAACTGCTGGAGAAGATTCCTGAGAATG
CCGAGGCCACGGTGGTCCTTGTGGGCTGCGTGGAGTTCCTCTCCCGCCCCACCATGGCCTTTGTGCGGCT
CCGGGAGGCTGTGGAGTTGGACGCAGTGTTGGAGGTGCCGGTGCCTGTGCGTTTCCTCTTCCTGCTGCTG
GGCCCGAGTAGTGCCAACATGGACTACCACGAGATCGGCCGCTCCATCTCCACCCTCATGTCAGACAAGC
AATTCCACGAGGCAGCCTACCTGGCTGACGAGCGGGAGGACCTGCTGACGGCCATCAACGCCTTCCTGGA
CTGCAGCGTGGTGCTGCCGCCTTCAGAAGTGCAGGGCGAGGAGCTGCTGCGCTCTGTGGCCCACTTCCAG
CGCCAGATGCTCAAGAAGCGAGAGGAGCAGGGCCGGCTGCTACCTACAGGGGCTGGGCTGGAGCCCAAAT
CTGCCCAAGATAAGGCGCTCCTGCAGATGGTAGAGGCGGCAGGGGCAGCTGAAGATGATCCCCTTCGGCG
GACGGGGCGGCCCTTTGGGGGGCTGATCCGAGATGTGCGGCGCCGCTATCCCCACTACCTGAGTGACTTC
CGAGATGCACTTGACCCTCAGTGCCTGGCCGCAGTCATCTTCATCTACTTTGCCGCCCTGTCTCCTGCCA
TCACCTTTGGGGGGCTGCTGGGAGAGAAGACGCAGGACCTGATAGGGGTGTCGGAGCTGATTATGTCCAC
AGCGCTCCAGGGCGTGGTCTTCTGCCTGCTGGGTGCCCAGCCCCTGTTGGTGATCGGCTTCTCAGGGCCC
CTGCTGGTCTTTGAGGAGGCCTTCTTCTCGTTCTGTAGCAGCAACCACCTGGAGTACCTGGTGGGCCGTG
TGTGGATCGGCTTCTGGCTGGTGTTCCTGGCCCTGCTCATGGTGGCCCTGGAGGGGAGCTTCCTGGTCCG
CTTCGTCTCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACTCATCTTCATCTATGAGACCTTC
TACAAGCTGGTGAAGATCTTCCAGGAGCACCCCCTGCATGGCTGCTCAGCCTCCAACAGCTCAGAGGTGG
ACGGCGGTGAGAACATGACATGGGCCGGGGCAAGACCCACGCTGGGGCCGGGCAACAGGAGCTTGGCTGG
GCAGTCTGGGCAGGGGAAGCCCCGGGGCCAGCCCAACACGGCCCTGCTGTCGCTGGTGCTCATGGCCGGC
ACCTTCTTCATCGCCTTCTTCCTGCGCAAATTCAAGAACAGCCGGTTCTTTCCTGGCCGGATCCGGCGGG
TGATTGGGGACTTTGGGGTGCCCATCGCCATCCTCATCATGGTGCTTGTGGATTACAGTATTGAGGACAC
CTATACCCAGAAGCTGAGCGTTCCCAGTGGATTCTCGGTGACTGCCCCAGAAAAGAGGGGCTGGGTCATC
AACCCCCTGGGAGAGAAGAGCCCCTTCCCTGTGTGGATGATGGTTGCCAGCCTGCTGCCCGCCATCCTGG
TCTTCATTCTCATCTTCATGGAGACACAGATCACCACGCTCATCATCTCCAAGAAGGAGCGCATGCTGCA
GAAGGGCTCCGGCTTCCACCTGGACCTGCTGCTCATCGTGGCCATGGGCGGCATCTGTGCCCTCTTTGGC
CTGCCCTGGTTGGCTGCTGCCACTGTCCGCTCTGTCACTCACGCCAACGCGCTCACTGTCATGAGCAAGG
CTGTGGCACCTGGGGACAAGCCCAAGATTCAGGAAGTCAAGGAGCAGCGGGTGACGGGGCTGCTGGTTGC
CCTGCTTGTGGGCCTCTCCATAGTTATCGGGGATCTGCTCCGGCAGATCCCCCTGGCCGTGCTCTTTGGA
ATTTTCCTGTACATGGGAGTCACCTCCCTTAACGGGATCCAGTTCTATGAGCGGCTGCATCTGCTGCTCA
TGCCGCCCAAACACCACCCAGATGTCACTTACGTCAAGAAGGTCCGGACCCTCCGTATGCACCTGTTCAC
GGCCCTGCAGCTGCTCTGCCTGGCCCTGCTCTGGGCCGTCATGTCCACAGCTGCCTCCCTGGCCTTCCCC
TTCATCCTCATCCTCACAGTGCCGCTCCGCATGGTGGTGCTCACCCGTATCTTCACCGACCGAGAGATGA
AATGTCTGGATGCTAACGAGGCAGAGCCGGTGTTTGATGAGCGGGAGGGTGTGGACGAGTACAATGAGAT
GCCCATGCCTGTGTAG

Translation (1241 aa):
MSSAPRRPAKGADSFCTPEPESLGPGTPGFPEQEEDELHRTLGVERFEEILQEAGSRGGEEPGRSYGEED
FEYHRQSSHHIHHPLSTHLPPDARRRKTPQGPGRKPRRRPGASPTGETPTIEEGEEDEDEASEAEGARAL
TQPSPVSTPSSVQFFLQEDDSADRKAERTSPSSPAPLPHQEATPRASKGAQAGTQVEEAEAEAVAVASGT
AGGDDGGASGRPLPKAQPGHRSYNLQERRRIGSMTGAEQALLPRVPTDEIEAQTLATADLDLMKSHRFED
VPGVRRHLVRKNAKGSTQSGREGREPGPTPRARPRAPHKPHEVFVELNELLLDKNQEPQWRETARWIKFE
EDVEEETERWGKPHVASLSFRSLLELRRTLAHGAVLLDLDQQTLPGVAHQVVEQMVISDQIKAEDRANVL
RALLLKHSHPSDEKDFSFPRNISAGSLGSLLGHHHGQGAESDPHVTEPLMGGVPETRLEVERERELPPPA
PPAGITRSKSKHELKLLEKIPENAEATVVLVGCVEFLSRPTMAFVRLREAVELDAVLEVPVPVRFLFLLL
GPSSANMDYHEIGRSISTLMSDKQFHEAAYLADEREDLLTAINAFLDCSVVLPPSEVQGEELLRSVAHFQ
RQMLKKREEQGRLLPTGAGLEPKSAQDKALLQMVEAAGAAEDDPLRRTGRPFGGLIRDVRRRYPHYLSDF
RDALDPQCLAAVIFIYFAALSPAITFGGLLGEKTQDLIGVSELIMSTALQGVVFCLLGAQPLLVIGFSGP
LLVFEEAFFSFCSSNHLEYLVGRVWIGFWLVFLALLMVALEGSFLVRFVSRFTQEIFAFLISLIFIYETF
YKLVKIFQEHPLHGCSASNSSEVDGGENMTWAGARPTLGPGNRSLAGQSGQGKPRGQPNTALLSLVLMAG
TFFIAFFLRKFKNSRFFPGRIRRVIGDFGVPIAILIMVLVDYSIEDTYTQKLSVPSGFSVTAPEKRGWVI
NPLGEKSPFPVWMMVASLLPAILVFILIFMETQITTLIISKKERMLQKGSGFHLDLLLIVAMGGICALFG
LPWLAAATVRSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTGLLVALLVGLSIVIGDLLRQIPLAVLFG
IFLYMGVTSLNGIQFYERLHLLLMPPKHHPDVTYVKKVRTLRMHLFTALQLLCLALLWAVMSTAASLAFP
FILILTVPLRMVVLTRIFTDREMKCLDANEAEPVFDEREGVDEYNEMPMPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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