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Report for CCDS59252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59252.1 Public Homo sapiens 15 GOLGA8O 24 110 108 CCDS HistoryNCBI Gene:728047Re-query CCDS DB by CCDS ID:59252.1Re-query CCDS DB by GeneID:728047See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 59252.1
This gene represents one of several golgin A8 family genes. This family member lacks full-length transcript support, and thus the exon combination of this CCDS representation is inferred. It is supported by a combination of tiled partial transcript alignments that are specifically derived from this gene, e.g., DB068178.1 and BQ477899.1, and by transcript alignments from other family members.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 59252.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509311.7 ENSP00000423159.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000509311.7Link to Ensembl Protein Viewer:ENSP00000423159.2Re-query CCDS DB by Nucleotide ID:ENST00000509311Re-query CCDS DB by Protein ID:ENSP00000423159
Original member Current member NCBI NM_001277308.1 NP_001264237.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001277308.1Link to Protein Sequence:NP_001264237.1Re-query CCDS DB by Nucleotide ID:NM_001277308Re-query CCDS DB by Protein ID:NP_001264237Link to BLAST:NP_001264237.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264237.1 632 A6NCC3-2 632 100% 0 0

Chromosomal Locations for CCDS 59252.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 32445106 32445281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32445367 32445522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32445618 32445715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32445798 32445898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32446474 32446565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32446997 32447072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32448318 32448386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32448642 32448898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32449275 32449362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32449558 32449665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32449772 32449858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32450913 32451022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32451118 32451202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32451291 32451338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32451601 32451639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32452491 32452571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32452753 32452812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32453703 32453822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32455489 32455536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGGCAGAAGAAACTCAACACAACAAATTGGCTGCAGCCAAGAAAAAGTTAAAAGAATATTGGCAGAAAA
ACAGACCTAGAGTTCCAGCAGGAGTGAACAGGAACAGGAAAACAAATGGCAGTATCCCTGAGACAGCCAC
TTCCGGTGGTTGCCAGCCACCTGGGGATTCAGCAACAGGTTTCCACAGGGAAGGCCCTACATCATCTGCT
ACCCTGAAAGATCTGGAGAGCCCGTGCCAAGAACGAGCAGTAGTCCTGGATTCAACGTCCGTAAAAATCA
GTCGACTGAAGAACACCATCAAATCTTTGAAACAACAGAAGAAACAAGTGGAACATCAGCTGGAAGAAGA
AAAGAAAGCAAACAACGAGAGACAGAAAGCCGAAAGGGAGCTAGAGGTTCAAATCCAGACATTGATCATA
CAGAAAGAGGAACTAAATACGGACCTGTACCACATGGAACGTTCTCTCAGATACTTTGAAGAAGAGTCCA
AGGACCTGGCTGTCCGCCTGCAACATTCATTGCAGTGTAAAGGAGAGTTAGAGAGCGCTCTGTCTGCTGT
CATCGCCACAGAGAAGAAGAAGGCAAACCAGTTGTCCAGCTGCAGCAAAGCACATACAGAGTGGGAGTTA
GAGCAGTCCCTACAGGACCAGGCACTGCTGAAAGCGCAGCTGACACAGTTGAAGGAGTCATTTCAACAAC
TCCAATTAGAAAGAGATGAGTGTGCTGAACATATAGAAGGAGAGAGGGCCCGGTGGCATCAGAGGATGAG
TAAAATGTCGCAGGAGATTTGCACATTAAAGAAAGAGAAGCAGCAAGATATGCGTCGGGTAGAGGAGCTG
GAGAGGAGCTTGTCCAAACTCAAAAACCAGATGGCTGAACCCTTGCCCCCGGAGCCCCCAGCAGTGCCCT
CTGAGGTGGAGCTGCAGCACCTGAGGAAGGAACTAGAGAGAGTGGCAGGAGAGCTCCAGTCCCAGGTCAA
AAACAATCAGCACATAAGTCTCCTGAACCGGCGACAAGAAGAGAGGATTCGGGAACAGGAAGAGAGGCTT
CGGAAGCAGGAGGAGAGGCTTCAGGAGCAGCACGAGAAGCTTCGGCAGCTGGCCAAGCCACAGAGCGTCT
TCGAGGAGCTGAACAATGAGAACAAGAGCACACTGCAGTTGGAGCAGCAAGTAAAGGAGCTACAGGAGAA
GCTTGGCGAGGAGCACCTGGAAGCGGCCAGCCAGCAGAACCAGCAGCTAACGGCCCAGCTGAGCCTCATG
GCTCTCCCTGGGGAAGGACACGGAGGAGAACATCTGGACAGTGAGGGGGAGGAGGCACCTCGGCCCATGC
CGAGTGTCCCAGAGGACCCGGAGAGCAGGGAGGCCATGAGCAGCTTTATGGACCACCTGAAGGAGAAGGC
AGACCTGAGTGAGCTGGTGAAAAAACAAGAACTTCGCTTCATTCAATACTGGCAAGAGAGATGCCATCAG
AAAATCCATCACCTTTTATCAGAACCAGGGGGCCGTGCCAAAGATGCAGCACTGGGAGGAGGACACCATC
AGGCTGGAGCTCAGGGAGGAGATGAAGGTGAAGCTGCTGGAGCTGCAGCAGATGGTATTGCGGCTTACAG
CAACTACAACAATGGGCACAGAAAATTCCTGGCCGCTGCCCACAACTCTGCTGATGAGCCCGGTCCAGGA
GCCCCAGCCCCCCAGGAGCTTGGGGCTGCAGACAAGCATGGTGATCTTCGTGAGGTGACCCTCACCTCCT
CTGCCCAAGGAGAGGCCAGGGAGGATCCTCTCCTTGACAAGCCTACTGCACAGCCGATCGTGCAGGACCA
CCAGGAGCACCCAGGCTTGGGCAGCAACTGCTGTGTGCCATTATTTTGTTGGGCTTGGCTGCCAAGAAGA
AGGAGATAA

Translation (632 aa):
MAEETQHNKLAAAKKKLKEYWQKNRPRVPAGVNRNRKTNGSIPETATSGGCQPPGDSATGFHREGPTSSA
TLKDLESPCQERAVVLDSTSVKISRLKNTIKSLKQQKKQVEHQLEEEKKANNERQKAERELEVQIQTLII
QKEELNTDLYHMERSLRYFEEESKDLAVRLQHSLQCKGELESALSAVIATEKKKANQLSSCSKAHTEWEL
EQSLQDQALLKAQLTQLKESFQQLQLERDECAEHIEGERARWHQRMSKMSQEICTLKKEKQQDMRRVEEL
ERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQSQVKNNQHISLLNRRQEERIREQEERL
RKQEERLQEQHEKLRQLAKPQSVFEELNNENKSTLQLEQQVKELQEKLGEEHLEAASQQNQQLTAQLSLM
ALPGEGHGGEHLDSEGEEAPRPMPSVPEDPESREAMSSFMDHLKEKADLSELVKKQELRFIQYWQERCHQ
KIHHLLSEPGGRAKDAALGGGHHQAGAQGGDEGEAAGAAADGIAAYSNYNNGHRKFLAAAHNSADEPGPG
APAPQELGAADKHGDLREVTLTSSAQGEAREDPLLDKPTAQPIVQDHQEHPGLGSNCCVPLFCWAWLPRR
RR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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