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Report for CCDS59771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59771.1 Public Mus musculus X Fam47c 23 108 98 CCDS HistoryNCBI Gene:70864Re-query CCDS DB by CCDS ID:59771.1Re-query CCDS DB by GeneID:70864See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59771.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105110.3 ENSMUSP00000137737.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105110.3Link to Ensembl Protein Viewer:ENSMUSP00000137737.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105110Re-query CCDS DB by Protein ID:ENSMUSP00000137737
Original member Current member NCBI NM_001164739.1 NP_001158211.1 Accepted alive Link to Nucleotide Sequence:NM_001164739.1Link to Protein Sequence:NP_001158211.1Re-query CCDS DB by Nucleotide ID:NM_001164739Re-query CCDS DB by Protein ID:NP_001158211Link to BLAST:NP_001158211.1

Chromosomal Locations for CCDS 59771.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 78737814 78739106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGGAGAGCAGTGGCTGCCATGGAATCGCCCCCGGCAGGTACTTCAGCCAATGCCTCTGGGAATGACCT
GCAAGCCCTGGTTCAAGGACAGGTTGCCTTCTAAGTGTTTTGCGAAGCACAAACAGGAACAACATAAGTT
CCCTACCTCTCTGGATGGCCGACGCTGGGTGTTTGTGAAGGAAGGGCTGGATGATTTCAGGAAGGGCTGT
CCGCCTAGTGAAGGTATGATCATTCGTGGTCCCAAAGACGGTTTTCTCCCCACAATTTCTCATGAAGTCC
ACCATGGCTCCAGAAAGAGTCAGAAAAATCGGTGCCAGGACTTAAGCCTGTTTTCCTCTCTGTCATTGGC
CCAGCAAGCTCGCAAGGCCTTTGTGAAGAGAACAGAAGCAAAACTGACCCAGCGTCCTTTGGTTTTCTGG
CCCCTGGAGGACGGAATTCCTAGCGATATTGAGCTCTTAGAAAATGTGCTAGAAGCTCTTGACACTGACC
AGAAGTTGGAGGCTAAAGTGGATCACTGTGAGGACAGAAGAAAATATATTCACTCTGTTCATCTGCCTAG
TGTGGCTGAGGAATCCTCTGAAAAAGAAGAACCAGAACCTCACAGGTTTCCTGGGTCACGTAAATACAGT
ATGCTTCAAGAAAAAAAGCCCCGCAAAAAGAACCCCGCCAAGCAGTCTCTTTATTACCACCACATACCCA
AAGGAGTCTATGACTTCTGTGCATGGGTAAACTCATTTGGAGACTTGGGCATTGATGAACATTTCATGAT
GAAGCAATTTGACATTGGCTATGAGTGCAAACCAGTCTATACTGATTCTGCCATCAAGAAAATCAGCCTG
CTTCCTCCAGATCTCAGGTTCTGCAGGAGGCTCAGCAAAGTGAAAGAGATCAGATTCTCCATACAGGAGG
CAAACTTTGAAAGGAAACTCCGAAAACCGTTTGATCCTTACAAGTCCAACAGGGATAAGATTAGATATGG
AGCATGGTACCTGAAGCCATATCTGTGGAAAAAGCTAGTAAATGATGAGCCTTTGATGGACCCTGAAGAG
TTATTTGAACTTGAAGGTGGAAAGTACAGTAAACCAGACATCATTGAAGATCTTTACGGAACAATTGCCT
TTAAGGATTTTATCCTAAGCAAAGGCTACAGTATGCCGGCCATCCTGGAGAAGTTGTTTATGAGGAAAGG
ATGGAATTATGACACTGTCAACACTCCAATACCAAGAGTACTCAAAGCACATGAATTGATCATGCAGCAA
AGGGATGAAGATTATGATGATGAAAATGACTAG

Translation (430 aa):
MGEQWLPWNRPRQVLQPMPLGMTCKPWFKDRLPSKCFAKHKQEQHKFPTSLDGRRWVFVKEGLDDFRKGC
PPSEGMIIRGPKDGFLPTISHEVHHGSRKSQKNRCQDLSLFSSLSLAQQARKAFVKRTEAKLTQRPLVFW
PLEDGIPSDIELLENVLEALDTDQKLEAKVDHCEDRRKYIHSVHLPSVAEESSEKEEPEPHRFPGSRKYS
MLQEKKPRKKNPAKQSLYYHHIPKGVYDFCAWVNSFGDLGIDEHFMMKQFDIGYECKPVYTDSAIKKISL
LPPDLRFCRRLSKVKEIRFSIQEANFERKLRKPFDPYKSNRDKIRYGAWYLKPYLWKKLVNDEPLMDPEE
LFELEGGKYSKPDIIEDLYGTIAFKDFILSKGYSMPAILEKLFMRKGWNYDTVNTPIPRVLKAHELIMQQ
RDEDYDDEND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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