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Report for CCDS60285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60285.1 Public Homo sapiens 1 TRIM46 24 110 108 CCDS HistoryNCBI Gene:80128Re-query CCDS DB by CCDS ID:60285.1Re-query CCDS DB by GeneID:80128See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60285.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368385.8 ENSP00000357369.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368385.8Link to Ensembl Protein Viewer:ENSP00000357369.4Re-query CCDS DB by Nucleotide ID:ENST00000368385Re-query CCDS DB by Protein ID:ENSP00000357369
Original member Current member NCBI NM_001282379.2 NP_001269308.1 Accepted alive Link to Nucleotide Sequence:NM_001282379.2Link to Protein Sequence:NP_001269308.1Re-query CCDS DB by Nucleotide ID:NM_001282379Re-query CCDS DB by Protein ID:NP_001269308Link to BLAST:NP_001269308.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269308.1 551 Q7Z4K8-2 551 100% 0 0

Chromosomal Locations for CCDS 60285.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155173967 155174029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155175386 155175647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155175888 155176231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155176932 155177075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155177195 155177290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155178002 155178255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155178492 155178613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155179632 155179934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155180435 155180502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGCAGAGGGTGAGGATATGCAGACCTTCACTTCCATCATGGACGCACTGGTCCGCATCAGTACCAGCA
TGAAGAACATGGAGAAGGAACTGCTGTGCCCAGTGTGTCAAGAGATGTACAAGCAGCCACTGGTGCTGCC
CTGTACCCACAACGTGTGCCAGGCCTGTGCCCGAGAGGTCTTGGGCCAGCAGGGCTACATAGGACATGGT
GGGGACCCCAGCTCCGAGCCCACCTCTCCTGCCTCCACCCCTTCCACCCGCAGCCCCCGCCTCTCCCGCA
GAACTCTCCCCAAGCCAGACCGCCTGGACCGGCTGCTTAAGTCAGGCTTTGGGACATACCCTGGGAGGAA
GCGAGGTGCTTTGCACCCCCAAGTGATCATGTTCCCGTGCCCAGCCTGCCAAGGTGATGTGGAGCTTGGG
GAGCGGGGTCTGGCAGGGCTTTTCCGGAACCTGACCCTGGAGCGTGTGGTGGAGCGGTACCGCCAGAGTG
TGAGTGTGGGAGGTGCCATCCTGTGCCAGTTGTGCAAGCCCCCACCACTAGAGGCCACCAAGGGCTGCAC
AGAGTGCCGCGCCACCTTCTGCAATGAGTGCTTCAAGCTCTTCCACCCCTGGGGCACCCAGAAGGCCCAG
CATGAGCCCACCCTGCCTACCCTCTCCTTCCGACCCAAGGGCCTTATGTGCCCAGACCACAAGGAAGAGG
TGACCCACTACTGCAAGACATGCCAACGCCTGGTATGTCAACTCTGCCGGGTGCGGCGCACCCACAGCGG
GCACAAGATCACACCAGTGCTCAGTGCCTACCAGGCCCTCAAGGACAAGCTGACAAAGAGCCTGACATAC
ATCCTGGGAAACCAGGACACGGTACAGACCCAGATCTGTGAGCTGGAGGAGGCCGTGAGGCACACCGAGG
TGAGTGGTCAGCAGGCCAAGGAGGAGGTGTCGCAGCTGGTGCGGGGGCTGGGGGCTGTGCTGGAGGAGAA
GCGGGCATCACTGCTTCAGGCCATTGAAGAATGCCAGCAGGAGCGGCTGGCCCGTCTCAGCGCCCAGATC
CAGGAGCACCGGAGCCTGCTGGATGGCTCAGGTCTGGTGGGCTATGCCCAGGAAGTACTTAAGGAAACAG
ACCAGCCTTGCTTTGTGCAAGCCGCCAAGCAGCTGCACAACAGGATTGCCCGAGCCACTGAAGCCCTCCA
GACATTCCGGCCAGCTGCCAGCTCCTCCTTCCGCCATTGCCAGCTCGACGTGGGACGTGAGATGAAGCTG
CTGACAGAGCTTAACTTCCTGCGAGTGCCTGAGGCCCCCGTCATTGACACCCAGCGCACCTTTGCCTATG
ATCAGATCTTCCTGTGCTGGCGGCTGCCCCCCCATTCACCACCTGCCTGGCACTATACCGTTGAGTTCCG
GCGCACGGATGTGCCTGCTCAGCCAGGCCCCACCCGCTGGCAGCGGCGGGAGGAGGTGAGGGGCACCAGT
GCCCTGCTTGAGAACCCCGACACGGGCTCTGTGTATGTGCTGCGTGTCCGCGGCTGCAACAAGGCCGGCT
ACGGCGAATACAGTGAAGATGTGCACCTGCACACGCCCCCGGCACCTGGAATACAAAACTTAGCCAGGCG
TGGTGGTGCGTGCCTACAATTCCAGCTACTCGGGAGGCTGAGGTAG

Translation (551 aa):
MAEGEDMQTFTSIMDALVRISTSMKNMEKELLCPVCQEMYKQPLVLPCTHNVCQACAREVLGQQGYIGHG
GDPSSEPTSPASTPSTRSPRLSRRTLPKPDRLDRLLKSGFGTYPGRKRGALHPQVIMFPCPACQGDVELG
ERGLAGLFRNLTLERVVERYRQSVSVGGAILCQLCKPPPLEATKGCTECRATFCNECFKLFHPWGTQKAQ
HEPTLPTLSFRPKGLMCPDHKEEVTHYCKTCQRLVCQLCRVRRTHSGHKITPVLSAYQALKDKLTKSLTY
ILGNQDTVQTQICELEEAVRHTEVSGQQAKEEVSQLVRGLGAVLEEKRASLLQAIEECQQERLARLSAQI
QEHRSLLDGSGLVGYAQEVLKETDQPCFVQAAKQLHNRIARATEALQTFRPAASSSFRHCQLDVGREMKL
LTELNFLRVPEAPVIDTQRTFAYDQIFLCWRLPPHSPPAWHYTVEFRRTDVPAQPGPTRWQRREEVRGTS
ALLENPDTGSVYVLRVRGCNKAGYGEYSEDVHLHTPPAPGIQNLARRGGACLQFQLLGRLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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