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Report for CCDS60470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60470.1 Public Homo sapiens 1 GCSAML 24 110 108 CCDS HistoryNCBI Gene:148823Re-query CCDS DB by CCDS ID:60470.1Re-query CCDS DB by GeneID:148823See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366489.5 ENSP00000355445.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366489.5Link to Ensembl Protein Viewer:ENSP00000355445.1Re-query CCDS DB by Nucleotide ID:ENST00000366489Re-query CCDS DB by Protein ID:ENSP00000355445
Original member Current member EBI ENST00000366491.6 ENSP00000355447.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366491.6Link to Ensembl Protein Viewer:ENSP00000355447.2Re-query CCDS DB by Nucleotide ID:ENST00000366491Re-query CCDS DB by Protein ID:ENSP00000355447
Original member Current member NCBI NM_001281834.2 NP_001268763.1 Accepted alive Link to Nucleotide Sequence:NM_001281834.2Link to Protein Sequence:NP_001268763.1Re-query CCDS DB by Nucleotide ID:NM_001281834Re-query CCDS DB by Protein ID:NP_001268763Link to BLAST:NP_001268763.1
Original member Current member NCBI NM_001281835.2 NP_001268764.1 Accepted alive Link to Nucleotide Sequence:NM_001281835.2Link to Protein Sequence:NP_001268764.1Re-query CCDS DB by Nucleotide ID:NM_001281835Re-query CCDS DB by Protein ID:NP_001268764Link to BLAST:NP_001268764.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268763.1 115 Q5JQS6-2 115 100% 0 0
NP_001268764.1 115 Q5JQS6-2 115 100% 0 0

Chromosomal Locations for CCDS 60470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 247549192 247549220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 247563590 247563639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 247565931 247565959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 247574143 247574382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGGGAAATTATCTCCTGCGAAAACTCAGGCAGGAAATGACTACATTTGAAAGAAAACTTCAAGATCAAG
ATAAGAAAAGCCAAGAAGTTTCATCCACTTCTAATCAGGAAAACGAGAATGGCAGTGGTTCTGAAGAAGT
GTGCTACACTGTCATTAATCACATCCCCCATCAGAGATCCTCCCTGAGCTCCAATGATGATGGCTATGAG
AACATTGACTCCCTCACAAGGAAAGTGAGACAGTTTAGAGAAAGGTCAGAGACAGAATATGCCCTTCTTA
GGACTTCTGTTAGTAGGCCTTGTTCCTGCACCCATGAGCATGATTATGAAGTTGTGTTTCCACACTAA

Translation (115 aa):
MGNYLLRKLRQEMTTFERKLQDQDKKSQEVSSTSNQENENGSGSEEVCYTVINHIPHQRSSLSSNDDGYE
NIDSLTRKVRQFRERSETEYALLRTSVSRPCSCTHEHDYEVVFPH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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