CCDS Report for Consensus CDS

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Report for CCDS6093.2 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
6093.2	Public	Homo sapiens	8	UNC5D	24	110	108

Public Note for CCDS 6093.1
The coding region has been updated to represent an alternative 5' splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6093.2

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000404895.7	ENSP00000385143.2	MANE Select	Accepted	alive
		NCBI	NM_080872.4	NP_543148.2	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_543148.2	953	Q6UXZ4-1	953	100%	0	0

Chromosomal Locations for CCDS 6093.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)

Genome Browser links:

Chromosome	Start	Stop
8	35235785	35235887
8	35549292	35549510
8	35568098	35568241
8	35595554	35595657
8	35683547	35683727
8	35684582	35684749
8	35686545	35686709
8	35705929	35705961
8	35722210	35722395
8	35726152	35726529
8	35731012	35731096
8	35748527	35748695
8	35750582	35750809
8	35759320	35759469
8	35766902	35767066
8	35774299	35774477
8	35790359	35790563

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGGGGAGAGCGGCGGCCACCGCAGGCGGCGGCGGAGGGGCGCGCCGCTGGCTCCCGTGGCTGGGGCTGT GCTTCTGGGCGGCAGGGACCGCGGCTGCCCGAGGAACTGACAATGGCGAAGCCCTTCCCGAATCCATCCC ATCAGCTCCTGGGACACTGCCTCATTTCATAGAGGAGCCAGATGATGCTTATATTATCAAGAGCAACCCT ATTGCACTCAGGTGCAAAGCGAGGCCAGCCATGCAGATATTCTTCAAATGCAACGGCGAGTGGGTCCATC AGAACGAGCACGTCTCTGAAGAGACTCTGGACGAGAGCTCAGGTTTGAAGGTCCGCGAAGTGTTCATCAA TGTTACTAGGCAACAGGTGGAGGACTTCCATGGGCCCGAGGACTATTGGTGCCAGTGTGTGGCGTGGAGC CACCTGGGTACCTCCAAGAGCAGGAAGGCCTCTGTGCGCATAGCCTATTTACGGAAAAACTTTGAACAAG ACCCACAAGGAAGGGAAGTTCCCATTGAAGGCATGATTGTACTGCACTGCCGCCCACCAGAGGGAGTCCC TGCTGCCGAGGTGGAATGGCTGAAAAATGAAGAGCCCATTGACTCTGAACAAGACGAGAACATTGACACC AGGGCTGACCATAACCTGATCATCAGGCAGGCACGGCTCTCGGACTCAGGAAATTACACCTGCATGGCAG CCAACATCGTGGCTAAGAGGAGAAGCCTGTCGGCCACTGTTGTGGTCTACGTGAATGGAGGCTGGTCTTC CTGGACAGAGTGGTCAGCCTGCAATGTTCGCTGTGGTAGAGGATGGCAGAAACGTTCCCGGACCTGCACC AACCCAGCTCCTCTCAATGGTGGGGCCTTTTGTGAGGGAATGTCAGTGCAGAAAATAACCTGCACTTCTC TTTGTCCTGTGGATGGGAGCTGGGAAGTGTGGAGCGAATGGTCCGTCTGCAGTCCAGAGTGTGAACATTT GCGGATCCGGGAGTGCACAGCACCACCCCCGAGAAATGGGGGCAAATTCTGTGAAGGTCTAAGCCAGGAA TCTGAAAACTGCACAGATGGTCTTTGCATCCTAGATAAAAAACCTCTTCATGAAATAAAACCCCAAAGCA TTGAGAATGCCAGCGACATTGCTTTGTACTCGGGCTTGGGTGCTGCCGTCGTGGCCGTTGCAGTCCTGGT CATTGGTGTCACCCTTTACAGACGGAGCCAGAGTGACTATGGCGTGGACGTCATTGACTCTTCTGCATTG ACAGGTGGCTTCCAGACCTTCAACTTCAAAACAGTCCGTCAAGGTAACTCCCTGCTCCTGAATTCTGCCA TGCAGCCAGATCTGACAGTGAGCCGGACATACAGCGGACCCATCTGTCTGCAGGACCCTCTGGACAAGGA GCTCATGACAGAGTCCTCACTCTTTAACCCTTTGTCGGACATCAAAGTGAAAGTCCAGAGCTCGTTCATG GTTTCCCTGGGAGTGTCTGAGAGAGCTGAGTACCACGGCAAGAATCATTCCAGGACTTTTCCCCATGGAA ACAACCACAGCTTTAGTACAATGCATCCCAGAAATAAAATGCCCTACATCCAAAATCTGTCATCACTCCC CACAAGGACAGAACTGAGGACAACTGGTGTCTTTGGCCATTTAGGGGGGCGCTTAGTAATGCCAAATACA GGGGTGAGCTTACTCATACCACACGGTGCCATCCCAGAGGAGAATTCTTGGGAGATTTATATGTCCATCA ACCAAGGTGAACCCAGCCTCCAGTCAGATGGCTCTGAGGTGCTCCTGAGTCCTGAAGTCACCTGTGGTCC TCCAGACATGATCGTCACCACTCCCTTTGCATTGACCATCCCGCACTGTGCAGATGTCAGTTCTGAGCAT TGGAATATCCATTTAAAGAAGAGGACACAGCAGGGCAAATGGGAGGAAGTGATGTCAGTGGAAGATGAAT CTACATCCTGTTACTGCCTTTTGGACCCCTTTGCGTGTCATGTGCTCCTGGACAGCTTTGGGACCTATGC GCTCACTGGAGAGCCAATCACAGACTGTGCCGTGAAGCAACTGAAGGTGGCGGTTTTTGGCTGCATGTCC TGTAACTCCCTGGATTACAACTTGAGAGTTTACTGTGTGGACAATACCCCTTGTGCATTTCAGGAAGTGG TTTCAGATGAAAGGCATCAAGGTGGACAGCTCCTGGAAGAACCAAAATTGCTGCATTTCAAAGGGAATAC CTTTAGTCTTCAGATTTCTGTCCTTGATATTCCCCCATTCCTCTGGAGAATTAAACCATTCACTGCCTGC CAGGAAGTCCCGTTCTCCCGCGTGTGGTGCAGTAACCGGCAGCCCCTGCACTGTGCCTTCTCCCTGGAGC GTTATACGCCCACTACCACCCAGCTGTCCTGCAAAATCTGCATTCGGCAGCTCAAAGGCCATGAACAGAT CCTCCAAGTGCAGACATCAATCCTAGAGAGTGAACGAGAAACCATCACTTTCTTCGCACAAGAGGACAGC ACTTTCCCTGCACAGACTGGCCCCAAAGCCTTCAAAATTCCCTACTCCATCAGACAGCGGATTTGTGCTA CATTTGATACCCCCAATGCCAAAGGCAAGGACTGGCAGATGTTAGCACAGAAAAACAGCATCAACAGGAA TTTATCTTATTTCGCTACACAAAGTAGCCCATCTGCTGTCATTTTGAACCTGTGGGAAGCTCGTCATCAG CATGATGGTGATCTTGACTCCCTGGCCTGTGCCCTTGAAGAGATTGGGAGGACACACACGAAACTCTCAA ACATTTCAGAATCCCAGCTTGATGAAGCCGACTTCAACTACAGCAGGCAAAATGGACTCTAG
Translation (953 aa):
MGRAAATAGGGGGARRWLPWLGLCFWAAGTAAARGTDNGEALPESIPSAPGTLPHFIEEPDDAYIIKSNP IALRCKARPAMQIFFKCNGEWVHQNEHVSEETLDESSGLKVREVFINVTRQQVEDFHGPEDYWCQCVAWS HLGTSKSRKASVRIAYLRKNFEQDPQGREVPIEGMIVLHCRPPEGVPAAEVEWLKNEEPIDSEQDENIDT RADHNLIIRQARLSDSGNYTCMAANIVAKRRSLSATVVVYVNGGWSSWTEWSACNVRCGRGWQKRSRTCT NPAPLNGGAFCEGMSVQKITCTSLCPVDGSWEVWSEWSVCSPECEHLRIRECTAPPPRNGGKFCEGLSQE SENCTDGLCILDKKPLHEIKPQSIENASDIALYSGLGAAVVAVAVLVIGVTLYRRSQSDYGVDVIDSSAL TGGFQTFNFKTVRQGNSLLLNSAMQPDLTVSRTYSGPICLQDPLDKELMTESSLFNPLSDIKVKVQSSFM VSLGVSERAEYHGKNHSRTFPHGNNHSFSTMHPRNKMPYIQNLSSLPTRTELRTTGVFGHLGGRLVMPNT GVSLLIPHGAIPEENSWEIYMSINQGEPSLQSDGSEVLLSPEVTCGPPDMIVTTPFALTIPHCADVSSEH WNIHLKKRTQQGKWEEVMSVEDESTSCYCLLDPFACHVLLDSFGTYALTGEPITDCAVKQLKVAVFGCMS CNSLDYNLRVYCVDNTPCAFQEVVSDERHQGGQLLEEPKLLHFKGNTFSLQISVLDIPPFLWRIKPFTAC QEVPFSRVWCSNRQPLHCAFSLERYTPTTTQLSCKICIRQLKGHEQILQVQTSILESERETITFFAQEDS TFPAQTGPKAFKIPYSIRQRICATFDTPNAKGKDWQMLAQKNSINRNLSYFATQSSPSAVILNLWEARHQ HDGDLDSLACALEEIGRTHTKLSNISESQLDEADFNYSRQNGL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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