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Report for CCDS6150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6150.1 Public Homo sapiens 8 ALKAL1 24 110 108 CCDS HistoryNCBI Gene:389658Re-query CCDS DB by CCDS ID:6150.1Re-query CCDS DB by GeneID:389658See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6150.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358543.9 ENSP00000351345.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358543.9Link to Ensembl Protein Viewer:ENSP00000351345.4Re-query CCDS DB by Nucleotide ID:ENST00000358543Re-query CCDS DB by Protein ID:ENSP00000351345
Original member Current member NCBI NM_207413.4 NP_997296.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207413.4Link to Protein Sequence:NP_997296.1Re-query CCDS DB by Nucleotide ID:NM_207413Re-query CCDS DB by Protein ID:NP_997296Link to BLAST:NP_997296.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997296.1 129 Q6UXT8-1 129 100% 0 0

Chromosomal Locations for CCDS 6150.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 52538443 52538507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52539831 52539911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52542392 52542445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52565067 52565256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGCGGCCCCTTAAGCCCGGCGCCCCTTTGCCCGCACTCTTCCTGCTGGCGCTGGCTTTGTCCCCGCACG
GAGCCCACGGGAGGCCCCGGGGGCGCAGGGGAGCGCGCGTCACGGATAAGGAGCCCAAGCCGTTGCTTTT
CCTCCCCGCGGCCGGGGCCGGCCGGACTCCCAGCGGCTCCCGGAGCGCAGAAATATTCCCAAGAGACTCT
AACTTAAAAGACAAATTCATAAAGCATTTCACAGGGCCGGTCACATTTTCACCAGAATGCAGCAAACATT
TCCACCGACTCTATTACAATACCAGGGAGTGCTCAACGCCAGCTTATTACAAAAGATGTGCTAGATTGTT
AACAAGATTAGCAGTGAGTCCACTGTGCTCCCAGACCTAG

Translation (129 aa):
MRPLKPGAPLPALFLLALALSPHGAHGRPRGRRGARVTDKEPKPLLFLPAAGAGRTPSGSRSAEIFPRDS
NLKDKFIKHFTGPVTFSPECSKHFHRLYYNTRECSTPAYYKRCARLLTRLAVSPLCSQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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