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Report for CCDS6155.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6155.1 Public Homo sapiens 8 RGS20 24 110 108 CCDS HistoryNCBI Gene:8601Re-query CCDS DB by CCDS ID:6155.1Re-query CCDS DB by GeneID:8601See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6155.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297313.8 ENSP00000297313.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297313.8Link to Ensembl Protein Viewer:ENSP00000297313.3Re-query CCDS DB by Nucleotide ID:ENST00000297313Re-query CCDS DB by Protein ID:ENSP00000297313
Original member Current member NCBI NM_170587.4 NP_733466.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_170587.4Link to Protein Sequence:NP_733466.1Re-query CCDS DB by Nucleotide ID:NM_170587Re-query CCDS DB by Protein ID:NP_733466Link to BLAST:NP_733466.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_733466.1 388 O76081-1 388 100% 0 0

Chromosomal Locations for CCDS 6155.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 53851900 53852064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53879258 53879602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53939576 53939724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53946665 53946748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53954076 53954310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53958270 53958458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGCCCCAGCTTTCCCAAGATAACCAAGAGTGCCTCCAGAAACATTTCTCCAGGCCGTCTATATGGACAC
AGTTTCTGCCCCTGTTCAGGGCTCAGAGATATAATACAGACATTCACCAAATCACAGAAAATGAAGGAGA
CCTCAGGGCTGTTCCTGATATCAAGTCCTTCCCGCCTGCACAGCTCCCAGACTCGCCCGCCGCCCCGAAG
CTGTTCGGCCTCCTTTCTAGCCCGCTTTCCAGCCTCGCAAGGTTCTTCTCTCACCTTCTCCGGCGACCCC
CTCCCGAGGCTCCCCGGAGGCGCCTGGACTTCTCCCCCCTGCTTCCCGCCCTGCCGGCCGCCCGGCTCTC
GAGGGGGCACGAGGAGCTGCCGGGCCGCCTCTCGCTCCTGCTCGGGGCGGCGCTGGCACTGCCCGGCCGA
CCCTCGGGGGGTCGTCCGCTGAGGCCCCCCCATCCGGTAGCCAAGCCCAGGGAAGAAGACGCCACCGCTG
GGCAGAGCTCGCCTATGCCGCAGATGGGATCAGAGCGGATGGAGATGCGGAAGCGGCAGATGCCCGCCGC
CCAGGACACACCAGGCGCCGCCCCAGGCCAGCCCGGAGCGGGGAGTCGCGGGTCCAACGCATGCTGCTTC
TGCTGGTGCTGCTGTTGTAGCTGCTCGTGTCTCACTGTTAGAAACCAGGAAGATCAGAGGCCCACAATAG
CTTCCCACGAACTCAGAGCAGATCTTCCAACCTGGGAAGAAAGCCCTGCTCCTACTCTGGAAGAAGTCAA
CGCCTGGGCTCAGTCATTTGACAAATTAATGGTCACTCCAGCAGGAAGGAATGCATTCCGTGAATTCCTC
CGAACAGAATTCAGTGAGGAAAATATGCTCTTCTGGATGGCCTGTGAGGAACTGAAAAAGGAAGCTAATA
AAAACATTATTGAAGAGAAAGCAAGGATAATCTATGAAGACTACATTTCTATACTTTCTCCTAAGGAGGT
GAGCTTAGACTCCCGGGTGAGAGAAGTGATCAACAGAAACATGGTGGAGCCATCCCAACACATATTCGAT
GATGCTCAACTTCAGATTTACACCCTGATGCACAGAGACTCATATCCTCGATTCATGAACTCTGCTGTCT
ATAAGGACTTGCTTCAGTCCTTATCGGAGAAATCTATTGAAGCATAG

Translation (388 aa):
MPQLSQDNQECLQKHFSRPSIWTQFLPLFRAQRYNTDIHQITENEGDLRAVPDIKSFPPAQLPDSPAAPK
LFGLLSSPLSSLARFFSHLLRRPPPEAPRRRLDFSPLLPALPAARLSRGHEELPGRLSLLLGAALALPGR
PSGGRPLRPPHPVAKPREEDATAGQSSPMPQMGSERMEMRKRQMPAAQDTPGAAPGQPGAGSRGSNACCF
CWCCCCSCSCLTVRNQEDQRPTIASHELRADLPTWEESPAPTLEEVNAWAQSFDKLMVTPAGRNAFREFL
RTEFSEENMLFWMACEELKKEANKNIIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVEPSQHIFD
DAQLQIYTLMHRDSYPRFMNSAVYKDLLQSLSEKSIEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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