NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS61839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61839.1 Public Homo sapiens 16 NUBP1 24 110 108 CCDS HistoryNCBI Gene:4682Re-query CCDS DB by CCDS ID:61839.1Re-query CCDS DB by GeneID:4682See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61839.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000433392.6 ENSP00000409654.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433392.6Link to Ensembl Protein Viewer:ENSP00000409654.2Re-query CCDS DB by Nucleotide ID:ENST00000433392Re-query CCDS DB by Protein ID:ENSP00000409654
Original member Current member NCBI NM_001278506.2 NP_001265435.1 Accepted alive Link to Nucleotide Sequence:NM_001278506.2Link to Protein Sequence:NP_001265435.1Re-query CCDS DB by Nucleotide ID:NM_001278506Re-query CCDS DB by Protein ID:NP_001265435Link to BLAST:NP_001265435.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265435.1 309 P53384-2 309 100% 0 0

Chromosomal Locations for CCDS 61839.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10743864 10743882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10743961 10744065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10747143 10747276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10752610 10752678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10756690 10756780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10757873 10758027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10761364 10761474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10761757 10761859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10767949 10768032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10769047 10769105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGAGGAGGTGCCTCACGACTGTCCAGGGGCCGACAGCGCCCAGGCGGGCAGAGGGGCTTCATGTCAGG
GATGCCCCAACCAGCGGCTGTGCGCTTCTGGAGCGGGGGCCACTCCGGACACGGCTATAGAGGAAATCAA
AGAGAAAATGAAGACTGTAAAACACAAAATCTTGGTATTGTCTGGGAAAGGCGGTGTTGGGAAAAGCACA
TTCAGCGCCCACCTTGCCCATGGCCTAGCAGAGGATGAAAACACACAGATTGCTCTTCTAGACATCGATA
TATGTGGGCCATCGATTCCCAAGATAATGGGATTGGAAGGAGAGCAGTACGTGGAAGACAACCTGGGGGT
GATGTCAGTGGGCTTCCTGCTCAGCAGTCCTGATGATGCTGTTATCTGGAGGGGACCCAAGAAAAACGGC
ATGATCAAGCAGTTCCTCCGAGATGTGGACTGGGGAGAGGTCGACTACCTCATTGTGGACACCCCACCTG
GGACGTCGGATGAACACCTCTCGGTCGTCCGGTACCTGGCCACAGCACACATCGATGGAGCAGTGATCAT
CACCACTCCCCAGGAGGTGTCACTCCAGGATGTCCGGAAAGAAATCAACTTCTGCCGCAAGGTGAAGCTG
CCCATCATCGGGGTGGTGGAGAACATGAGTGGCTTCATCTGTCCTAAGTGCAAGAAAGAATCTCAGATAT
TCCCTCCCACAACCGGGGGCGCGGAGCTCATGTGCCAGGACTTGGAGGTCCCTCTCCTCGGCAGAGTGCC
CCTGGATCCGCTCATAGGTAAGAATTGTGACAAAGGCCAGTCTTTTTTCATTGACGCCCCAGATTCCCCA
GCCACGTTAGCCTACAGAAGTATAATTCAGAGAATCCAAGAGTTTTGTAATCTCCATCAGTCAAAAGAAG
AGAACCTCATCAGTTCCTGA

Translation (309 aa):
MEEVPHDCPGADSAQAGRGASCQGCPNQRLCASGAGATPDTAIEEIKEKMKTVKHKILVLSGKGGVGKST
FSAHLAHGLAEDENTQIALLDIDICGPSIPKIMGLEGEQYVEDNLGVMSVGFLLSSPDDAVIWRGPKKNG
MIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSLQDVRKEINFCRKVKL
PIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNCDKGQSFFIDAPDSP
ATLAYRSIIQRIQEFCNLHQSKEENLISS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH