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Report for CCDS6344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6344.1 Public Homo sapiens 8 NTAQ1 24 110 108 CCDS HistoryNCBI Gene:55093Re-query CCDS DB by CCDS ID:6344.1Re-query CCDS DB by GeneID:55093See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6344.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287387.7 ENSP00000287387.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287387.7Link to Ensembl Protein Viewer:ENSP00000287387.2Re-query CCDS DB by Nucleotide ID:ENST00000287387Re-query CCDS DB by Protein ID:ENSP00000287387
Original member Current member NCBI NM_018024.3 NP_060494.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018024.3Link to Protein Sequence:NP_060494.1Re-query CCDS DB by Nucleotide ID:NM_018024Re-query CCDS DB by Protein ID:NP_060494Link to BLAST:NP_060494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060494.1 205 Q96HA8-1 205 100% 0 0

Chromosomal Locations for CCDS 6344.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 123416850 123416932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123427924 123428023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123429983 123430033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123436453 123436601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123437210 123437334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123441306 123441415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGAAGGTAATGGCCCCGCTGCTGTCCACTACCAGCCGGCCAGCCCCCCGCGGGACGCCTGCGTCTACA
GCAGCTGCTACTGTGAAGAAAATATTTGGAAGCTCTGTGAATACATCAAAAACCATGACCAGTATCCTTT
AGAAGAATGTTATGCTGTCTTCATATCTAATGAGAGGAAGATGATACCTATCTGGAAACAACAGGCGAGA
CCTGGAGATGGACCTGTGATCTGGGATTACCATGTTGTTTTGCTTCATGTTTCAAGTGGAGGACAGAACT
TCATTTATGATCTCGATACTGTCTTGCCATTTCCCTGCCTCTTTGACACTTATGTAGAAGATGCCTTTAA
GTCTGATGATGACATTCACCCACAGTTTAGGAGGAAATTTAGAGTGATCCGTGCAGATTCATATTTGAAG
AACTTTGCTTCTGACCGATCTCACATGAAAGACTCCAGTGGGAATTGGAGAGAGCCTCCGCCGCCATATC
CCTGCATTGAGACTGGAGATTCCAAAATGAACCTGAACGATTTCATCAGTATGGATCCCAAGGTAGGATG
GGGCGCCGTCTACACACTATCCGAATTTACACATCGGTTTGGCAGTAAAAACTGCTGA

Translation (205 aa):
MEGNGPAAVHYQPASPPRDACVYSSCYCEENIWKLCEYIKNHDQYPLEECYAVFISNERKMIPIWKQQAR
PGDGPVIWDYHVVLLHVSSGGQNFIYDLDTVLPFPCLFDTYVEDAFKSDDDIHPQFRRKFRVIRADSYLK
NFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNLNDFISMDPKVGWGAVYTLSEFTHRFGSKNC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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