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Report for CCDS6443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6443.1 Public Homo sapiens 9 DMRT3 24 110 108 CCDS HistoryNCBI Gene:58524Re-query CCDS DB by CCDS ID:6443.1Re-query CCDS DB by GeneID:58524See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6443.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000190165.3 ENSP00000190165.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000190165.3Link to Ensembl Protein Viewer:ENSP00000190165.2Re-query CCDS DB by Nucleotide ID:ENST00000190165Re-query CCDS DB by Protein ID:ENSP00000190165
Original member Current member NCBI NM_021240.4 NP_067063.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021240.4Link to Protein Sequence:NP_067063.1Re-query CCDS DB by Nucleotide ID:NM_021240Re-query CCDS DB by Protein ID:NP_067063Link to BLAST:NP_067063.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067063.1 472 Q9NQL9 472 100% 0 0

Chromosomal Locations for CCDS 6443.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 977002 977455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 990041 991005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGAACGGCTACGGCTCCCCCTACCTGTACATGGGCGGCCCGGTGTCGCAGCCGCCACGGGCGCCCCTGC
AGCGCACGCCCAAGTGCGCGCGCTGCCGCAACCATGGCGTCCTGTCCTGGCTCAAGGGCCACAAGCGTTA
CTGCCGCTTCAAGGACTGCACCTGCGAGAAGTGCATCCTCATCATCGAGCGGCAGCGGGTCATGGCTGCG
CAGGTGGCGCTGCGCCGGCAGCAGGCCAACGAGAGCTTGGAGAGCCTCATCCCCGACTCGCTGCGCGCTC
TGCCAGGGCCCCCGCCGCCGGGGGACGCCGTCGCCGCCCCGCAGCCGCCGCCAGCCTCTCAGCCGTCGCA
GCCGCAGCCGCCGCGCCCTGCTGCCGAGTTGGCCGCGGCCGCCGCGCTGCGTTGGACTGCCGAGCCGCAG
CCCGGGGCTCTGCAGGCGCAGCTCGCCAAGCCAGATTTGACTGAAGAACGACTTGGAGACGGCAAGTCGG
CAGACAATACAGAGGTCTTCAGTGACAAAGACACTGACCAGAGGAGTTCCCCAGATGTGGCAAAGAGTAA
GGGCTGCTTCACCCCTGAGAGCCCTGAGATAGTGTCCGTGGAGGAAGGGGGATACGCTGTCCAGAAAAAC
GGAGGCAACCCCGAGAGCCGCCCTGACAGCCCCAAGTGTCACGCGGAGCAGAATCACCTCCTGATTGAGG
GCCCCTCGGGGACTGTTTCTCTGCCCTTCAGCTTGAAAGCCAACAGACCGCCGCTTGAAGTGTTAAAAAA
GATATTCCCCAACCAGAAGCCAACGGTGCTTGAGCTCATCCTCAAGGGCTGTGGCGGGGACCTGGTGAGC
GCCGTGGAAGTCCTTCTGTCCAGCCGATCCTCAGTCACGGGAGCAGAGCGAACTTCCGCAGAACCTGAGA
GTCTAGCGTTGCCCTCCAATGGGCACATCTTTGAACACACCTTGAGCTCCTACCCCATCTCGTCTTCCAA
ATGGTCTGTGGGATCAGCCTTTCGAGTCCCAGACACGTTGAGGTTTTCTGCCGACTCTAGCAACGTTGTC
CCCAGTCCCTTGGCTGGGCCTCTGCAGCCCCCTTTCCCCCAGCCACCCCGGTACCCGCTGATGCTGAGGA
ATACTTTGGCGAGAAGCCAGTCGAGCCCCTTTTTGCCCAATGATGTCACCCTGTGGAACACCATGACGCT
GCAGCAGCAGTATCAGCTGAGGTCCCAGTATGTCAGTCCTTTCCCCAGTAACTCTACCAGCGTCTTCAGA
AGCTCGCCCGTCCTTCCTGCCCGCGCCACGGAAGACCCTCGGATTTCCATCCCTGATGATGGGTGTCCAT
TTGTGTCAAAGCAGTCCATTTACACCGAGGACGACTATGACGAGAGGTCTGACTCCTCAGACTCTAGAAC
ACTCAACACATCATCTTAA

Translation (472 aa):
MNGYGSPYLYMGGPVSQPPRAPLQRTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCILIIERQRVMAA
QVALRRQQANESLESLIPDSLRALPGPPPPGDAVAAPQPPPASQPSQPQPPRPAAELAAAAALRWTAEPQ
PGALQAQLAKPDLTEERLGDGKSADNTEVFSDKDTDQRSSPDVAKSKGCFTPESPEIVSVEEGGYAVQKN
GGNPESRPDSPKCHAEQNHLLIEGPSGTVSLPFSLKANRPPLEVLKKIFPNQKPTVLELILKGCGGDLVS
AVEVLLSSRSSVTGAERTSAEPESLALPSNGHIFEHTLSSYPISSSKWSVGSAFRVPDTLRFSADSSNVV
PSPLAGPLQPPFPQPPRYPLMLRNTLARSQSSPFLPNDVTLWNTMTLQQQYQLRSQYVSPFPSNSTSVFR
SSPVLPARATEDPRISIPDDGCPFVSKQSIYTEDDYDERSDSSDSRTLNTSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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