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Report for CCDS6536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6536.1 Public Homo sapiens 9 SPINK4 24 110 108 CCDS HistoryNCBI Gene:27290Re-query CCDS DB by CCDS ID:6536.1Re-query CCDS DB by GeneID:27290See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6536.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379721.4 ENSP00000369045.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379721.4Link to Ensembl Protein Viewer:ENSP00000369045.3Re-query CCDS DB by Nucleotide ID:ENST00000379721Re-query CCDS DB by Protein ID:ENSP00000369045
Original member Current member NCBI NM_014471.3 NP_055286.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014471.3Link to Protein Sequence:NP_055286.1Re-query CCDS DB by Nucleotide ID:NM_014471Re-query CCDS DB by Protein ID:NP_055286Link to BLAST:NP_055286.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055286.1 86 O60575 86 100% 0 0

Chromosomal Locations for CCDS 6536.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 33240209 33240269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33245112 33245152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33246616 33246728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33248426 33248471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (261 nt):
ATGGCCGTCCGCCAGTGGGTAATCGCCCTGGCCTTGGCTGCCCTCCTTGTTGTGGACAGGGAAGTGCCAG
TGGCAGCAGGAAAGCTCCCTTTCTCAAGAATGCCCATCTGTGAACACATGGTAGAGTCTCCAACCTGTTC
CCAGATGTCCAACCTGGTCTGCGGCACTGATGGGCTCACATATACGAATGAATGCCAGCTCTGCTTGGCC
CGGATAAAAACCAAACAGGACATCCAGATCATGAAAGATGGCAAATGCTGA

Translation (86 aa):
MAVRQWVIALALAALLVVDREVPVAAGKLPFSRMPICEHMVESPTCSQMSNLVCGTDGLTYTNECQLCLA
RIKTKQDIQIMKDGKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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