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Report for CCDS65535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65535.1 Public Homo sapiens 1 SPATA6 24 110 108 CCDS HistoryNCBI Gene:54558Re-query CCDS DB by CCDS ID:65535.1Re-query CCDS DB by GeneID:54558See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 65535.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371843.7 ENSP00000360909.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371843.7Link to Ensembl Protein Viewer:ENSP00000360909.3Re-query CCDS DB by Nucleotide ID:ENST00000371843Re-query CCDS DB by Protein ID:ENSP00000360909
Original member Current member NCBI NM_001286238.2 NP_001273167.1 Accepted alive Link to Nucleotide Sequence:NM_001286238.2Link to Protein Sequence:NP_001273167.1Re-query CCDS DB by Nucleotide ID:NM_001286238Re-query CCDS DB by Protein ID:NP_001273167Link to BLAST:NP_001273167.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273167.1 472 Q9NWH7-2 472 100% 0 0

Chromosomal Locations for CCDS 65535.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 48298713 48298893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48305787 48305878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48355718 48355769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48359586 48359770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48385309 48385349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48395267 48395354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48399351 48399644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48403802 48403882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48411464 48411588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48413110 48413151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48451552 48451600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48452994 48453131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48471958 48472008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGCCGAAGGTGAAGGCGCTGCAGTGCGCCCTGGCGCTGGAGATCAGCTCAGTAACTTGCCCAGGAGTCG
TGCTTAAAGACAAAGAGGACATCTATCTTAGCATCTGTGTGTTTGGCCAATACAAAAAGACACAATGTGT
CCCAGCCACTTTTCCCCTGGTCTTCAATGCCAGAATGGTGTTTGAAAAGGTGTTCCCGGACGCAGTAGAT
CCTGGAGATGTGGTTACACAGCTTGAATATGATACAGCAGTGTTCGAGTTGATACAGCTAGTTCCACCAG
TGGGTGAAACACTGTCTACGTATGACGAAAATACACGAGATTTCATGTTTCCGGGTCCAAACCAAATGTC
TGGACACCATGATTCAAACCGCCAGGTTACCATGAGGAGGATTTCTGGCCTTCGAGGAAATGCTCCAAGG
CTGGAATTTTCTACGACTTCAGTGATTACTGAATGTCTGATAAGTTCAAGGAAATGCCACACTCAGGATA
AATTTATTTACCATTTGGCTCCAGTTGAAAAATCACATGGCAGACTGCAAAACAGAACATCAAGATCACA
AAAGAAAAAATCCAAGTCACCTGAGAGAAGTAAATACTGTATAAATGCAAAAAACTACGAACAGCCTACA
ATTTCTTCAAAATCACACTCTCCATCTCCCTACACAAAAAGACGCATGTGTGAGCTATCTGAAGACACCA
GGCGGCGGCTGGCCCATTTAAATCTGGGACCCTATGAGTTCAAAAAAGAAACAGATAAACCTCCATTTGT
GATTAGACATGTTGATCCCCCAAGTCCCAGGGCTGATACTTTATTGGGATCTTCTGGAAGAGACTGTGAA
AGAGATGGATGGTCAAGGGTGCACAATGATCATTCTCATCTTGGCTGCTGCCGACCCAAGGATTATAAGG
TTATCAGGACACCCCATGGGAGAGACTTCGATGACTCTTTAGAAAAATGTGAAGAGTATTTGAGCCCAAG
GTCGTGTAGTAAGCCCCGGCATTCAGCGAGGACCTTGCTAGTCCATTCAGCACCCTCAACAATGCCAAAG
CATTCTCCAAGCCCTGTGTTAAATAGAGCTTCTCTCAGGGAAAGATTTCATTCTGATTGGTGTTCACCTT
CAAACTGCGATGAGATCCATGACCGGGATGAGAGAGACCTAGAGAAAGATGATGAACTGGAACTGAAAAG
AAGTCTTTTATGTAGAGACTCTGCCTATGACAGTGACCCCGAGTATAGCTCATGTCAGCAGCCACGTGGC
ACTTTCCATTTGGATGACGGTGAATACTGGTCCAACAGGGCAGCCTCTTATAAGGGAAAATCCCACCGAC
CCATCTTTGAGAACAGCATGGACAAGATGTACAGGAACTTATACAAAAAGGCCTGTAGTTCTGCTTCACA
TACACAGGAAAGCTTCTGA

Translation (472 aa):
MPKVKALQCALALEISSVTCPGVVLKDKEDIYLSICVFGQYKKTQCVPATFPLVFNARMVFEKVFPDAVD
PGDVVTQLEYDTAVFELIQLVPPVGETLSTYDENTRDFMFPGPNQMSGHHDSNRQVTMRRISGLRGNAPR
LEFSTTSVITECLISSRKCHTQDKFIYHLAPVEKSHGRLQNRTSRSQKKKSKSPERSKYCINAKNYEQPT
ISSKSHSPSPYTKRRMCELSEDTRRRLAHLNLGPYEFKKETDKPPFVIRHVDPPSPRADTLLGSSGRDCE
RDGWSRVHNDHSHLGCCRPKDYKVIRTPHGRDFDDSLEKCEEYLSPRSCSKPRHSARTLLVHSAPSTMPK
HSPSPVLNRASLRERFHSDWCSPSNCDEIHDRDERDLEKDDELELKRSLLCRDSAYDSDPEYSSCQQPRG
TFHLDDGEYWSNRAASYKGKSHRPIFENSMDKMYRNLYKKACSSASHTQESF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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