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Report for CCDS684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
684.1 Public Homo sapiens 1 DNAJB4 24 110 108 CCDS HistoryNCBI Gene:11080Re-query CCDS DB by CCDS ID:684.1Re-query CCDS DB by GeneID:11080See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 684.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370763.6 ENSP00000359799.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370763.6Link to Ensembl Protein Viewer:ENSP00000359799.5Re-query CCDS DB by Nucleotide ID:ENST00000370763Re-query CCDS DB by Protein ID:ENSP00000359799
Original member Current member NCBI NM_001317099.2 NP_001304028.1 Accepted alive Link to Nucleotide Sequence:NM_001317099.2Link to Protein Sequence:NP_001304028.1Re-query CCDS DB by Nucleotide ID:NM_001317099Re-query CCDS DB by Protein ID:NP_001304028Link to BLAST:NP_001304028.1
Original member Current member NCBI NM_007034.5 NP_008965.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007034.5Link to Protein Sequence:NP_008965.2Re-query CCDS DB by Nucleotide ID:NM_007034Re-query CCDS DB by Protein ID:NP_008965Link to BLAST:NP_008965.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304028.1 337 Q9UDY4 337 100% 0 0
NP_008965.2 337 Q9UDY4 337 100% 0 0

Chromosomal Locations for CCDS 684.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 78005111 78005321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78013051 78013619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78016014 78016247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGGGAAAGACTATTATTGCATTTTGGGAATTGAGAAAGGAGCTTCAGATGAAGATATTAAAAAGGCTT
ACCGAAAACAAGCCCTCAAATTTCATCCGGACAAGAACAAATCTCCTCAGGCAGAGGAAAAATTTAAAGA
GGTCGCAGAAGCTTATGAAGTATTGAGTGATCCTAAAAAGAGAGAAATATATGATCAGTTTGGGGAGGAA
GGGTTGAAAGGAGGAGCAGGAGGTACTGATGGACAAGGAGGTACCTTCCGGTACACCTTTCATGGCGATC
CTCATGCTACATTTGCTGCATTTTTCGGAGGGTCCAACCCCTTTGAAATTTTCTTTGGAAGACGAATGGG
TGGTGGTAGAGATTCTGAAGAAATGGAAATAGATGGTGATCCTTTTAGTGCCTTTGGTTTCAGCATGAAT
GGATATCCAAGAGACAGGAATTCTGTGGGGCCATCCCGCCTCAAACAAGATCCTCCAGTTATTCATGAAC
TTAGAGTATCACTTGAAGAGATATATAGTGGTTGTACCAAACGGATGAAGATTTCTCGAAAAAGGCTAAA
CGCTGATGGAAGGAGTTACAGATCTGAGGACAAAATTCTTACCATTGAGATTAAAAAAGGGTGGAAAGAA
GGCACCAAAATTACTTTTCCAAGAGAAGGAGATGAAACACCAAATAGTATTCCAGCAGACATTGTTTTTA
TCATTAAAGACAAAGATCATCCAAAATTTAAAAGGGATGGATCAAATATAATTTATACTGCTAAAATTAG
TTTACGAGAGGCATTGTGTGGCTGCTCAATTAATGTACCAACACTGGATGGAAGAAACATACCTATGTCA
GTAAATGATATTGTGAAACCCGGAATGAGGAGAAGAATTATTGGATATGGGCTGCCATTTCCAAAAAATC
CTGACCAACGTGGTGACCTTCTAATAGAATTTGAGGTGTCCTTCCCAGATACTATATCTTCTTCATCCAA
AGAAGTACTTAGGAAACATCTTCCTGCCTCATAG

Translation (337 aa):
MGKDYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEE
GLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRRMGGGRDSEEMEIDGDPFSAFGFSMN
GYPRDRNSVGPSRLKQDPPVIHELRVSLEEIYSGCTKRMKISRKRLNADGRSYRSEDKILTIEIKKGWKE
GTKITFPREGDETPNSIPADIVFIIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTLDGRNIPMS
VNDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFPDTISSSSKEVLRKHLPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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