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Report for CCDS69871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69871.1 Public Mus musculus 1 Col9a1 23 108 98 CCDS HistoryNCBI Gene:12839Re-query CCDS DB by CCDS ID:69871.1Re-query CCDS DB by GeneID:12839See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 69871.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088349.2 ENSMUSP00000085687.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088349.2Link to Ensembl Protein Viewer:ENSMUSP00000085687.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000088349Re-query CCDS DB by Protein ID:ENSMUSP00000085687
Original member Current member NCBI NM_001290691.1 NP_001277620.1 Accepted alive Link to Nucleotide Sequence:NM_001290691.1Link to Protein Sequence:NP_001277620.1Re-query CCDS DB by Nucleotide ID:NM_001290691Re-query CCDS DB by Protein ID:NP_001277620Link to BLAST:NP_001277620.1

Chromosomal Locations for CCDS 69871.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 24195380 24195457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24196891 24196965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24197300 24197335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24197444 24197506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24202014 24202067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24202297 24202332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24204658 24204681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24205054 24205107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24207386 24207439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24208174 24208206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24209059 24209115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24210373 24210426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24214539 24214592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24217536 24217589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24220744 24220797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24221579 24221632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24221770 24221823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24221945 24221998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24222422 24222475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24223575 24223619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24224504 24224557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24224647 24224700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24230196 24230249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24230883 24230954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24231451 24231486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24232185 24232229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24233571 24233603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24237125 24237271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24237442 24237496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24239207 24239395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24244358 24244435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24251677 24251861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGGCCTGGGCTGCCTGGGGACGAGGAGTGCTTGGGCTGTCACTGATGCTGTCTGGGCTCCGCTTGTGTG
CTGCTCAAAGAGGTCCTCCGGGTGAGCAGGGGCCTCCAGGGCCTCCTGGGCCTCCTGGAGTTCCGGGCAT
AGATGGCATTGATGGTGACCGAGGTCCAAAGGGTCCCCCAGGACCTCCGGGTCCTCCTGGAGACCCAGGC
AAGCCAGGAGCACCAGGCAAGCCAGGCACACCAGGAGCTGATGGATTAACAGGACCTGATGGATCCCCTG
GCTCTGTTGGACCAAGGGGACAAAAAGGAGAACCTGGTGTACCTGGGTCTCGTGGATTTCCAGGCCGTGG
TATTCCAGGACCCCCTGGTCCTCCTGGGACCACAGGACTTCCTGGAGAACTTGGCCGAGTAGGCCCTATT
GGAGACCCTGGGAAAAGAGGACCACCTGGCCCTCCTGGACCTCCAGGACCCAGTGGAACAATTGGATTTC
ATGATGGAGACCCATTGTGCCCCAATTCCTGCCCACCAGGTCGCTCTGGATATCCAGGCCTACCAGGCAT
GAGGGGCCATAAAGGGGCGAAAGGAGAAATCGGCGAGCCAGGAAGACAAGGACACAAGGGTGAAGAGGGT
GACCAGGGGGAACTGGGAGAAGTTGGCGATCAAGGACCTCCAGGACCTCAGGGTCTGAGAGGCATCACTG
GCATAGTTGGAGACAAAGGAGAAAAGGGTGCTCGGGGATTTGATGGAGAGCCTGGACCTCAGGGCATTCC
AGGTGCAGCTGGTGATCAAGGACAGCGAGGCCCTCCAGGAGAAACAGGTCCTGAGGGAGACAGAGGCATT
CAAGGTTCCCGAGGAATTCCTGGATCCCCAGGGCCAAAAGGAGACACGGGCTTGCCAGGTGTAGATGGCC
GAGATGGAATACCAGGAATGCCCGGGACAAAGGGTGAAGCAGGGAAGCCTGGACCCCCCGGGGACGTGGG
ATTGCAGGGCTTACCAGGTGTCCCTGGAATCCCTGGTGCAAAAGGTGTTGCCGGTGAAAAGGGTAACACG
GGTGCTCCAGGAAAGCCCGGTCAGTTGGGAAGTTCAGGGAAACCAGGCCAACAAGGGCCCCCAGGAGAGG
TTGGACCTCGGGGACCCAGGGGCCTTCCAGGCAGTAGAGGCCCGGTAGGACCAGAAGGGTCTCCAGGCAT
ACCAGGGAAACTGGGATCTGTTGGCAGCCCTGGCCTTCCTGGCTTGCCTGGGCCCCCTGGACTTCCTGGA
ATGAAAGGAGACAGGGGTGTATTTGGTGAACCGGGTCCCAAGGGTGAACAGGGTGCCTCTGGTGAAGAAG
GTGAAGCAGGAGCAAGGGGTGACCTTGGAGATATGGGACAACCTGGCCCAAAGGGATCTGTGGGTAACCC
CGGGGAGCCGGGTCTGAGGGGGCCTGAAGGAATCAGAGGGCTTCCTGGAGTGGAAGGACCAAGAGGACCA
CCTGGACCCCGGGGCATGCAGGGAGATCAGGGTGCCACTGGGCTGCCTGGTATCCAGGGCCCTCCGGGCA
GAGCGCCGACCGACCAGCACATCAAGCAGGTTTGCATGAGAGTCGTGCAAGAGCATTTTGCGGAAATGGC
AGCCAGCCTCAAGAGACCAGACACAGGAGCCTCTGGTCTTCCTGGGAGGCCTGGCCCCCCTGGGCCTCCG
GGCCCCCCTGGAGAGAATGGTTTCCCTGGTCAGATGGGAATCCGTGGTCTCCCAGGCATTAAGGGTCCCC
CTGGTGCTCTTGGCTTAAGAGGACCTAAAGGAGACTTGGGAGAAAAAGGAGAACGTGGTCCTCCAGGAAG
AGGTCCTAAGGGTTTGCCTGGAGCGATAGGTCTCCCAGGTGACCCAGGCCCTGCCAGCTATGGGAAAAAT
GGCCGTGACGGAGAGCAAGGTCCCCCGGGAGTGGCAGGAATTCCTGGTGTGCCTGGACCCCCAGGTCCTC
CAGGCCCTCCTGGGTTCTGTGAGCCAGCCTCTTGCACCCTGCAGTCTGGTCAAAGAGCATTTAGCAAAGG
GCCGGACAAGTGA

Translation (680 aa):
MAWAAWGRGVLGLSLMLSGLRLCAAQRGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPPGDPG
KPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPGVPGSRGFPGRGIPGPPGPPGTTGLPGELGRVGPI
GDPGKRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEG
DQGELGEVGDQGPPGPQGLRGITGIVGDKGEKGARGFDGEPGPQGIPGAAGDQGQRGPPGETGPEGDRGI
QGSRGIPGSPGPKGDTGLPGVDGRDGIPGMPGTKGEAGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNT
GAPGKPGQLGSSGKPGQQGPPGEVGPRGPRGLPGSRGPVGPEGSPGIPGKLGSVGSPGLPGLPGPPGLPG
MKGDRGVFGEPGPKGEQGASGEEGEAGARGDLGDMGQPGPKGSVGNPGEPGLRGPEGIRGLPGVEGPRGP
PGPRGMQGDQGATGLPGIQGPPGRAPTDQHIKQVCMRVVQEHFAEMAASLKRPDTGASGLPGRPGPPGPP
GPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPKGLPGAIGLPGDPGPASYGKN
GRDGEQGPPGVAGIPGVPGPPGPPGPPGFCEPASCTLQSGQRAFSKGPDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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