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Report for CCDS70097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70097.1 Public Mus musculus 10 Elk3 23 108 98 CCDS HistoryNCBI Gene:13713Re-query CCDS DB by CCDS ID:70097.1Re-query CCDS DB by GeneID:13713See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70097.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151153.1 ENSMUSP00000121754.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151153.1Link to Ensembl Protein Viewer:ENSMUSP00000121754.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151153Re-query CCDS DB by Protein ID:ENSMUSP00000121754
Original member Current member NCBI NM_001282967.1 NP_001269896.1 Accepted alive Link to Nucleotide Sequence:NM_001282967.1Link to Protein Sequence:NP_001269896.1Re-query CCDS DB by Nucleotide ID:NM_001282967Re-query CCDS DB by Protein ID:NP_001269896Link to BLAST:NP_001269896.1

Chromosomal Locations for CCDS 70097.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93250010 93250108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93254689 93254811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93284769 93284975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGAGAGTGCAATCACGCTGTGGCAGTTCCTCTTGCACTTGCTGCTGGACCAGAAACATGAGCACCTCA
TCTGCTGGACATCGAACGATGGCGAGTTCAAGCTCCTCAAGGCGGAAGAAGTGGCCAAGCTGTGGGGCCT
CCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCGCTGAGATACTATTACGACAAGACA
CCAAGTGGACTGTTTCTGGCCTCGAGTCCGCTGCTGCCCAGCATACACTTCTGGAGCAGCCTTAGTCCTG
TCGCCCCACTGAGTCCTGCCAGGCTGCAAGGGCCGAACACACTTTTCCAGTTCCCCACACTGCTCAACGG
TCACATGCCGGTGCCGCTCCCCAGTCTGGACAGAGCTCCATCCCCAGTTCTGCTGTCCCCCAGCTCTCAG
AAATCCTGA

Translation (142 aa):
MESAITLWQFLLHLLLDQKHEHLICWTSNDGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALRYYYDKT
PSGLFLASSPLLPSIHFWSSLSPVAPLSPARLQGPNTLFQFPTLLNGHMPVPLPSLDRAPSPVLLSPSSQ
KS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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